Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1206
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    27   0.21 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.5  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   6.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   6.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   6.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   6.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   6.0  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 499 HAINIMQSNILKLILGAIKHPFFL*KPSKASFGFFLFASLHNNR*NILFNN 347
           H   + +  +L+L    + HP +   P  A   +FLF SL N+     FNN
Sbjct: 250 HTSLVTRQKLLELGWDVLPHPPY--SPDLAPSDYFLFRSLQNSLNGKNFNN 298


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -1

Query: 505 ITHAINIMQSNILKLILGAIKH 440
           + + +NIM  N++ ++LG + +
Sbjct: 58  LKNEVNIMMKNVVDIVLGGLTY 79


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 506 HNSCNQYNAI*YFEVNF 456
           HN+ N Y  + Y+ +N+
Sbjct: 91  HNNNNNYKKLQYYNINY 107


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 506 HNSCNQYNAI*YFEVNF 456
           HN+ N Y  + Y+ +N+
Sbjct: 91  HNNNNNYKKLQYYNINY 107


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 506 HNSCNQYNAI*YFEVNF 456
           HN+ N Y  + Y+ +N+
Sbjct: 91  HNNNNNYKKLQYYNINY 107


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 506 HNSCNQYNAI*YFEVNF 456
           HN+ N Y  + Y+ +N+
Sbjct: 91  HNNNNNYKKLQYYNINY 107


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 506 HNSCNQYNAI*YFEVNF 456
           HN+ N Y  + Y+ +N+
Sbjct: 324 HNNNNNYKKLQYYNINY 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,153
Number of Sequences: 438
Number of extensions: 3343
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)