Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1196
         (421 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    25   0.23 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   0.69 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   6.4  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   6.4  

>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 348 LWCQRKTAPYKNVNVQNL 401
           +WC++ T  Y N+NV  +
Sbjct: 14  VWCEQYTTKYDNINVDEI 31


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 0.69
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 127 PSPTVAKCDSTKSLTSTRHSTSSPQKV*SLCQLVPKKSS 243
           PSP+          TST + T S + V + C  VP  +S
Sbjct: 75  PSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTAS 113


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 275 NHTKSHLKVTIDDFFGTN*HKLHTF*GDEVECLV 174
           NHT S +     DF  T    L T+ G+  + +V
Sbjct: 300 NHTLSVISTDGSDFNATEVDSLVTYAGERFDFIV 333


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 163 SLTSTRHSTSSPQKV*SLCQLVPK 234
           +LTST HS S  Q +    Q +PK
Sbjct: 469 ALTSTEHSLSQSQHI----QKIPK 488


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 163 SLTSTRHSTSSPQKV*SLCQLVPK 234
           +LTST HS S  Q +    Q +PK
Sbjct: 294 ALTSTEHSLSQSQHI----QKIPK 313


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,004
Number of Sequences: 336
Number of extensions: 1731
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)