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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1196
         (421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842...    47   7e-06
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866...    44   4e-05
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528...    42   3e-04
12_02_0126 + 13958247-13958298,13958422-13958972,13959076-13960047     28   3.5  
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269...    28   3.5  
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572...    28   3.5  
12_02_0442 - 19118536-19119222                                         27   4.6  
12_01_0825 - 7611594-7611728,7612061-7612276,7612505-7612589,761...    27   4.6  
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424...    27   4.6  
09_06_0183 - 21406474-21406636,21407412-21407956                       27   6.1  
09_02_0587 - 10948888-10949124,10949281-10949393,10949830-109502...    27   6.1  
01_06_0744 + 31628884-31629035,31629157-31629284,31629695-31629702     27   6.1  
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808...    27   8.1  
08_02_0551 - 18535219-18536134,18536140-18536345                       27   8.1  
05_05_0352 + 24328117-24328303,24328451-24328559,24330634-243306...    27   8.1  
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638...    27   8.1  

>01_05_0108 +
           18183250-18183336,18183451-18183962,18184074-18184245,
           18184984-18185022,18185117-18185185,18185281-18185397,
           18185842-18186056,18187085-18187240,18187328-18187527,
           18187927-18188084,18188321-18188417,18188738-18188829,
           18189018-18189191
          Length = 695

 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 12/151 (7%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETL--PKPDRG--KMRFHKIAN 170
           F  W NS      T I N+ +D RNG  L+ +++ I+  ++     +R   K+ F K+ N
Sbjct: 433 FRLWINS--LGISTYINNVFEDLRNGWVLLEVIDKIAPGSVNWKMANRPPIKLPFRKVEN 490

Query: 171 VNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI--------SVEEM 326
            N+ L         LV+I   +IV GN K+ L  +W  ++R+ I  +        + +E+
Sbjct: 491 CNQVLKIGKELKFSLVNIAGNDIVQGNKKLILAFLWQ-LMRYNILQLLKNLRFHSNGKEI 549

Query: 327 TAKEGLLLWCQRKTAPYKNVNVQNLHLSFKD 419
           T  + +L+W  +K    K+    +   SFKD
Sbjct: 550 TDND-ILIWANKKV---KDSGKHSRMESFKD 576


>02_04_0414 -
           22685981-22686178,22686374-22686465,22686580-22686676,
           22686801-22686916,22687314-22687513,22687588-22687740,
           22687960-22688171,22688403-22688519,22688613-22688687,
           22688815-22688853,22689518-22689689,22689809-22690056,
           22690151-22690324,22690418-22690504
          Length = 659

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGK----MRFHKIAN 170
           F  W NS      T + N+ +D R G  L+ +L+ IS   +      K    M F K+ N
Sbjct: 403 FRLWINS--LGIATYVNNLFEDVRTGWVLLEVLDKISPGIVNWKQASKPPIIMPFRKVEN 460

Query: 171 VNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIW----TIILRFA--IQDISVEEMTA 332
            N+ ++        +V+I   +IV GN K+ L  +W    T IL+    ++  S ++   
Sbjct: 461 GNQVIEIGKELKFSVVNISGNDIVQGNKKLILAFLWQLMRTSILQLLKNLRTHSKDKEIT 520

Query: 333 KEGLLLWCQRKTAPYKN 383
              +L+W   K     N
Sbjct: 521 DADILIWANNKDKSIAN 537


>02_05_0540 +
           29852109-29852195,29852304-29852477,29852585-29852841,
           29852954-29853125,29853513-29853551,29853647-29853715,
           29853795-29853911,29854190-29854401,29854578-29854736,
           29854810-29855009,29855100-29855266,29855346-29855442,
           29855560-29855651,29855861-29856139
          Length = 706

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETL-----PKPDRGKMRFHKIA 167
           F  W NS      + + N+ +D R+G  L+ +L+ +S  ++      KP   K+ F K+ 
Sbjct: 406 FRMWINS--LGVDSYVNNVFEDVRHGWVLLEVLDKVSPGSVNWKLASKPPI-KLPFRKLE 462

Query: 168 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 296
           N N+ +         LV++   +IV GN K+ + ++W  ++RF
Sbjct: 463 NCNQVVKIGKELKFSLVNLAGNDIVQGNKKLIVALLWQ-LMRF 504



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
 Frame = +3

Query: 63  DDFRNGLKLMLLLEVISGETLPKPDRGKMR----FHKIANVNKALDFIASKGVKLVSIGA 230
           D  R+G+ L  L+ +    T+ +    K R    + +  N    L+   + G  +V+IG 
Sbjct: 164 DLVRDGVLLCKLINLAVPGTIDERAINKKRVLNPWERNENHTLCLNSAKAIGCTVVNIGT 223

Query: 231 EEIVDGNLKMTLGMIWTIILRFAIQDISVEE 323
           +++V+G   + LG+I  II    + D+++++
Sbjct: 224 QDLVEGRPHLILGLISQIIKIQLLADLNLKK 254



 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 12  WCNSHLRKAG--TGIENIEDDFRNGLKLMLLLEVISGETLPK 131
           W N HL+KAG    + N   D ++G     LL+ ++ E  P+
Sbjct: 283 WMNHHLKKAGYKKTVSNFSTDVKDGEAYAYLLKALAPEHSPE 324


>12_02_0126 + 13958247-13958298,13958422-13958972,13959076-13960047
          Length = 524

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 141 GKMRFHKIANVNKALDFIASK 203
           G MR HKI +V KAL F+  K
Sbjct: 71  GSMRGHKIESVKKALQFVIMK 91


>05_04_0272 +
           19624898-19625071,19625909-19626370,19626471-19626905,
           19626992-19627237,19627318-19628085,19628245-19628417,
           19629337-19629440,19629525-19630127,19630210-19630214
          Length = 989

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query: 21  SHLRKAGTGIENIEDDFR-----NGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKAL 185
           +H  KAG  I     D R     NGL+  LLLE I+ +  P      ++  K+AN   AL
Sbjct: 773 AHGSKAGFPISGFYSDMRKMQNMNGLEGQLLLEPITNDLQPMEKCNSVQSPKVANFT-AL 831

Query: 186 DFIASKGVKLVS 221
             + ++ +  VS
Sbjct: 832 HNVDNESMNHVS 843


>05_04_0139 +
           18355597-18355696,18356665-18356778,18357118-18357263,
           18357365-18357910,18358397-18358600
          Length = 369

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 197 GDEVECLVDVSDFVESHFATVGLGQSLAGDDL 102
           G  V+  + +++  E H A VG GQ+L GDD+
Sbjct: 212 GGGVDGELAIAEAAELHDAVVGRGQALHGDDV 243


>12_02_0442 - 19118536-19119222
          Length = 228

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 142 PRSGLGRVSPEMTSSSNMSFRPLRKSSSMFSMPVP 38
           PR GLGR  P   ++   S RP+R+       P P
Sbjct: 22  PRQGLGRAKPRSEATRWQSRRPVRRLDRSPDPPPP 56


>12_01_0825 -
           7611594-7611728,7612061-7612276,7612505-7612589,
           7613170-7613372,7613935-7615723,7616322-7616450,
           7616825-7616928,7618725-7618779,7618860-7618975
          Length = 943

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 30  RKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGV 209
           R+  T I    DD    L+   +L   +G+ L  PD GK    +  N N     +  +GV
Sbjct: 714 RRTATNITTTYDDLPGNLQPAGILIEHNGDDLVSPDYGKNTMKQKQNTNMESLSVCKEGV 773


>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
            34543642-34543731,34544324-34544390,34544483-34544676,
            34544770-34545510,34545596-34545661,34545783-34545908,
            34545978-34546073,34546153-34546521,34546602-34546724,
            34546802-34546906,34547394-34547531,34547665-34547760,
            34548018-34548275
          Length = 1311

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 302  DGEAENNGPNHTKSHLK-VTIDDFFG 228
            DGE    GP H  +HLK V I  FFG
Sbjct: 1196 DGELRIVGPPHQHAHLKRVRISGFFG 1221


>09_06_0183 - 21406474-21406636,21407412-21407956
          Length = 235

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 44  RHREHRGRLPQWPEAHVAAGGHLRRDSAQARPWQNAIPQNR*RQQGTRL 190
           R RE +GR  Q  +   A+G   R  + Q  P  +  PQ+  R +GTRL
Sbjct: 185 RRREKKGRRMQEEKRVEASGSFSRSLATQVGPSPDRWPQS--RNRGTRL 231


>09_02_0587 -
           10948888-10949124,10949281-10949393,10949830-10950293,
           10951223-10951766,10951902-10951971
          Length = 475

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -1

Query: 184 SALLTLAILWNRILPRSGLGRVSPEMTSSSNMSFRPLRKSSSMFSMPVP 38
           S + TL+  ++R   R   G+++P+ T   N+S     K++SMFS+P P
Sbjct: 199 SDISTLSYPYDRY-DRHWWGQIAPDPTCK-NLSTASTIKNNSMFSVPSP 245


>01_06_0744 + 31628884-31629035,31629157-31629284,31629695-31629702
          Length = 95

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 268 PRVILRLPSTISSAPIDTSFTPFEAMKSSALLT 170
           PR+ILR P  +SS  ++T   P  +  +SAL+T
Sbjct: 46  PRLILRSPVEMSSVCLET-LMPMHSATASALMT 77


>10_08_1005 -
           22179407-22180122,22180210-22180653,22180737-22180861,
           22180939-22181169,22181250-22181805,22181896-22182312,
           22182405-22183216,22183653-22183738,22184464-22184534,
           22184553-22185573,22186018-22186062,22186252-22186326,
           22186797-22186871
          Length = 1557

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -3

Query: 401 QVLDIDILVRRCLTLTPEQQTFLCGHFFN*DVLDGEAENNGPNHTKSHLKVTIDD 237
           +V D + L   C     E QT   G      VLDG+ +N+   +    LKV + D
Sbjct: 467 KVPDGEWLCEECCLKEDENQTRSNGGTSRNKVLDGKNQNSESTNNSKTLKVVVTD 521


>08_02_0551 - 18535219-18536134,18536140-18536345
          Length = 373

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 12  WCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIA 167
           W NS+      G  + E ++R+ + + +  E  S E +P P RG +  +  A
Sbjct: 121 WFNSNFGLFRNGFRSPEANWRDTMFVEMFPEAPSPEEIPPPCRGVLEVYAAA 172


>05_05_0352 +
           24328117-24328303,24328451-24328559,24330634-24330692,
           24331139-24331220,24331361-24331481,24331751-24332278,
           24332724-24332831,24332934-24333131,24334043-24334234,
           24336116-24336199,24336385-24336525,24336683-24336748,
           24336880-24337047,24337134-24337463,24337568-24337666
          Length = 823

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 63  DDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIA 197
           D+F N   L L+L  ++G+++PK ++  +      +V     F+A
Sbjct: 357 DEFDNKFNLYLVLLPLNGQSMPKLEKPYLSCQPTFSVRHLCQFVA 401


>04_04_1268 -
           32262994-32263017,32263411-32263488,32263653-32263800,
           32263890-32264127,32264210-32264420,32264499-32264680,
           32264765-32264866,32265009-32266317,32266906-32266988,
           32267436-32267559
          Length = 832

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 381 SCTALSYVDTRATDLPLRSFLQLRCLGW 298
           SCTA +Y +   T  P  +  Q RCL W
Sbjct: 454 SCTAYAYTNLTITGSPGTTASQSRCLLW 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,352,499
Number of Sequences: 37544
Number of extensions: 231904
Number of successful extensions: 730
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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