Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1196
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 47 7e-06
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 44 4e-05
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 42 3e-04
12_02_0126 + 13958247-13958298,13958422-13958972,13959076-13960047 28 3.5
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 28 3.5
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572... 28 3.5
12_02_0442 - 19118536-19119222 27 4.6
12_01_0825 - 7611594-7611728,7612061-7612276,7612505-7612589,761... 27 4.6
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 4.6
09_06_0183 - 21406474-21406636,21407412-21407956 27 6.1
09_02_0587 - 10948888-10949124,10949281-10949393,10949830-109502... 27 6.1
01_06_0744 + 31628884-31629035,31629157-31629284,31629695-31629702 27 6.1
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 27 8.1
08_02_0551 - 18535219-18536134,18536140-18536345 27 8.1
05_05_0352 + 24328117-24328303,24328451-24328559,24330634-243306... 27 8.1
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638... 27 8.1
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 46.8 bits (106), Expect = 7e-06
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 12/151 (7%)
Frame = +3
Query: 3 FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETL--PKPDRG--KMRFHKIAN 170
F W NS T I N+ +D RNG L+ +++ I+ ++ +R K+ F K+ N
Sbjct: 433 FRLWINS--LGISTYINNVFEDLRNGWVLLEVIDKIAPGSVNWKMANRPPIKLPFRKVEN 490
Query: 171 VNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI--------SVEEM 326
N+ L LV+I +IV GN K+ L +W ++R+ I + + +E+
Sbjct: 491 CNQVLKIGKELKFSLVNIAGNDIVQGNKKLILAFLWQ-LMRYNILQLLKNLRFHSNGKEI 549
Query: 327 TAKEGLLLWCQRKTAPYKNVNVQNLHLSFKD 419
T + +L+W +K K+ + SFKD
Sbjct: 550 TDND-ILIWANKKV---KDSGKHSRMESFKD 576
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 44.4 bits (100), Expect = 4e-05
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Frame = +3
Query: 3 FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGK----MRFHKIAN 170
F W NS T + N+ +D R G L+ +L+ IS + K M F K+ N
Sbjct: 403 FRLWINS--LGIATYVNNLFEDVRTGWVLLEVLDKISPGIVNWKQASKPPIIMPFRKVEN 460
Query: 171 VNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIW----TIILRFA--IQDISVEEMTA 332
N+ ++ +V+I +IV GN K+ L +W T IL+ ++ S ++
Sbjct: 461 GNQVIEIGKELKFSVVNISGNDIVQGNKKLILAFLWQLMRTSILQLLKNLRTHSKDKEIT 520
Query: 333 KEGLLLWCQRKTAPYKN 383
+L+W K N
Sbjct: 521 DADILIWANNKDKSIAN 537
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 41.5 bits (93), Expect = 3e-04
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Frame = +3
Query: 3 FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETL-----PKPDRGKMRFHKIA 167
F W NS + + N+ +D R+G L+ +L+ +S ++ KP K+ F K+
Sbjct: 406 FRMWINS--LGVDSYVNNVFEDVRHGWVLLEVLDKVSPGSVNWKLASKPPI-KLPFRKLE 462
Query: 168 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 296
N N+ + LV++ +IV GN K+ + ++W ++RF
Sbjct: 463 NCNQVVKIGKELKFSLVNLAGNDIVQGNKKLIVALLWQ-LMRF 504
Score = 29.5 bits (63), Expect = 1.1
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +3
Query: 63 DDFRNGLKLMLLLEVISGETLPKPDRGKMR----FHKIANVNKALDFIASKGVKLVSIGA 230
D R+G+ L L+ + T+ + K R + + N L+ + G +V+IG
Sbjct: 164 DLVRDGVLLCKLINLAVPGTIDERAINKKRVLNPWERNENHTLCLNSAKAIGCTVVNIGT 223
Query: 231 EEIVDGNLKMTLGMIWTIILRFAIQDISVEE 323
+++V+G + LG+I II + D+++++
Sbjct: 224 QDLVEGRPHLILGLISQIIKIQLLADLNLKK 254
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 12 WCNSHLRKAG--TGIENIEDDFRNGLKLMLLLEVISGETLPK 131
W N HL+KAG + N D ++G LL+ ++ E P+
Sbjct: 283 WMNHHLKKAGYKKTVSNFSTDVKDGEAYAYLLKALAPEHSPE 324
>12_02_0126 + 13958247-13958298,13958422-13958972,13959076-13960047
Length = 524
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 141 GKMRFHKIANVNKALDFIASK 203
G MR HKI +V KAL F+ K
Sbjct: 71 GSMRGHKIESVKKALQFVIMK 91
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 27.9 bits (59), Expect = 3.5
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 21 SHLRKAGTGIENIEDDFR-----NGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKAL 185
+H KAG I D R NGL+ LLLE I+ + P ++ K+AN AL
Sbjct: 773 AHGSKAGFPISGFYSDMRKMQNMNGLEGQLLLEPITNDLQPMEKCNSVQSPKVANFT-AL 831
Query: 186 DFIASKGVKLVS 221
+ ++ + VS
Sbjct: 832 HNVDNESMNHVS 843
>05_04_0139 +
18355597-18355696,18356665-18356778,18357118-18357263,
18357365-18357910,18358397-18358600
Length = 369
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 197 GDEVECLVDVSDFVESHFATVGLGQSLAGDDL 102
G V+ + +++ E H A VG GQ+L GDD+
Sbjct: 212 GGGVDGELAIAEAAELHDAVVGRGQALHGDDV 243
>12_02_0442 - 19118536-19119222
Length = 228
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 142 PRSGLGRVSPEMTSSSNMSFRPLRKSSSMFSMPVP 38
PR GLGR P ++ S RP+R+ P P
Sbjct: 22 PRQGLGRAKPRSEATRWQSRRPVRRLDRSPDPPPP 56
>12_01_0825 -
7611594-7611728,7612061-7612276,7612505-7612589,
7613170-7613372,7613935-7615723,7616322-7616450,
7616825-7616928,7618725-7618779,7618860-7618975
Length = 943
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +3
Query: 30 RKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGV 209
R+ T I DD L+ +L +G+ L PD GK + N N + +GV
Sbjct: 714 RRTATNITTTYDDLPGNLQPAGILIEHNGDDLVSPDYGKNTMKQKQNTNMESLSVCKEGV 773
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -3
Query: 302 DGEAENNGPNHTKSHLK-VTIDDFFG 228
DGE GP H +HLK V I FFG
Sbjct: 1196 DGELRIVGPPHQHAHLKRVRISGFFG 1221
>09_06_0183 - 21406474-21406636,21407412-21407956
Length = 235
Score = 27.1 bits (57), Expect = 6.1
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 44 RHREHRGRLPQWPEAHVAAGGHLRRDSAQARPWQNAIPQNR*RQQGTRL 190
R RE +GR Q + A+G R + Q P + PQ+ R +GTRL
Sbjct: 185 RRREKKGRRMQEEKRVEASGSFSRSLATQVGPSPDRWPQS--RNRGTRL 231
>09_02_0587 -
10948888-10949124,10949281-10949393,10949830-10950293,
10951223-10951766,10951902-10951971
Length = 475
Score = 27.1 bits (57), Expect = 6.1
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -1
Query: 184 SALLTLAILWNRILPRSGLGRVSPEMTSSSNMSFRPLRKSSSMFSMPVP 38
S + TL+ ++R R G+++P+ T N+S K++SMFS+P P
Sbjct: 199 SDISTLSYPYDRY-DRHWWGQIAPDPTCK-NLSTASTIKNNSMFSVPSP 245
>01_06_0744 + 31628884-31629035,31629157-31629284,31629695-31629702
Length = 95
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 268 PRVILRLPSTISSAPIDTSFTPFEAMKSSALLT 170
PR+ILR P +SS ++T P + +SAL+T
Sbjct: 46 PRLILRSPVEMSSVCLET-LMPMHSATASALMT 77
>10_08_1005 -
22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 401 QVLDIDILVRRCLTLTPEQQTFLCGHFFN*DVLDGEAENNGPNHTKSHLKVTIDD 237
+V D + L C E QT G VLDG+ +N+ + LKV + D
Sbjct: 467 KVPDGEWLCEECCLKEDENQTRSNGGTSRNKVLDGKNQNSESTNNSKTLKVVVTD 521
>08_02_0551 - 18535219-18536134,18536140-18536345
Length = 373
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 12 WCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIA 167
W NS+ G + E ++R+ + + + E S E +P P RG + + A
Sbjct: 121 WFNSNFGLFRNGFRSPEANWRDTMFVEMFPEAPSPEEIPPPCRGVLEVYAAA 172
>05_05_0352 +
24328117-24328303,24328451-24328559,24330634-24330692,
24331139-24331220,24331361-24331481,24331751-24332278,
24332724-24332831,24332934-24333131,24334043-24334234,
24336116-24336199,24336385-24336525,24336683-24336748,
24336880-24337047,24337134-24337463,24337568-24337666
Length = 823
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 63 DDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIA 197
D+F N L L+L ++G+++PK ++ + +V F+A
Sbjct: 357 DEFDNKFNLYLVLLPLNGQSMPKLEKPYLSCQPTFSVRHLCQFVA 401
>04_04_1268 -
32262994-32263017,32263411-32263488,32263653-32263800,
32263890-32264127,32264210-32264420,32264499-32264680,
32264765-32264866,32265009-32266317,32266906-32266988,
32267436-32267559
Length = 832
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 381 SCTALSYVDTRATDLPLRSFLQLRCLGW 298
SCTA +Y + T P + Q RCL W
Sbjct: 454 SCTAYAYTNLTITGSPGTTASQSRCLLW 481
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,352,499
Number of Sequences: 37544
Number of extensions: 231904
Number of successful extensions: 730
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -