SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1196
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)             119   1e-27
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   1e-21
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)                    89   1e-18
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)               79   1e-15
SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   1e-09
SB_40303| Best HMM Match : CH (HMM E-Value=5.1e-10)                    58   3e-09
SB_30962| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   5e-09
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     50   1e-06
SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   2e-06
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)                46   1e-05
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   3e-05
SB_47648| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   9e-05
SB_59804| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   5e-04
SB_595| Best HMM Match : CH (HMM E-Value=0)                            38   0.004
SB_39164| Best HMM Match : RNB (HMM E-Value=0)                         36   0.018
SB_40161| Best HMM Match : CH (HMM E-Value=4.3e-30)                    34   0.055
SB_15403| Best HMM Match : CH (HMM E-Value=0)                          34   0.055
SB_47035| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.073
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)                  29   2.1  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_25948| Best HMM Match : Globin (HMM E-Value=1.5e-18)                27   4.8  
SB_48827| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_33733| Best HMM Match : CYTH (HMM E-Value=2.1e-05)                  27   8.3  
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)                 27   8.3  

>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score =  119 bits (286), Expect = 1e-27
 Identities = 60/129 (46%), Positives = 88/129 (68%), Gaps = 7/129 (5%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKA 182
           FT W N+ L K G  I ++ ++ R+G  L+LLLEV+    LP+ +RG +RFH + NV  A
Sbjct: 43  FTKWVNNRLLKVGVRILDLYEELRDGENLLLLLEVLCNVKLPR-ERGLLRFHMLQNVQTA 101

Query: 183 LDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE-------EMTAKEG 341
           L+F+ SK +KLV+I +++IVDGN K+TLG+IWTIIL F I D+ VE       +++AK+ 
Sbjct: 102 LEFLESKKIKLVNIRSDDIVDGNPKLTLGLIWTIILYFQINDLDVEIAGEKVQDLSAKDA 161

Query: 342 LLLWCQRKT 368
           LL W ++ T
Sbjct: 162 LLHWSKKVT 170


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 52/129 (40%), Positives = 81/129 (62%), Gaps = 8/129 (6%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKM-RFHKIANVNK 179
           FT WCN HL+     + ++E D  +GLKL+ LL+V+S + LP+ ++  + +  KI NV+ 
Sbjct: 378 FTRWCNEHLKCVKQFVYSLETDLCDGLKLIALLQVLSQKRLPRFNKKPVFKSQKIENVSI 437

Query: 180 ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI-------QDISVEEMTAKE 338
           +L FI  + ++LV+I A +IV GNLK+ LG+IWT+IL++ I        D    +MT K+
Sbjct: 438 SLKFIEDENIRLVNIDASDIVKGNLKLILGLIWTLILKYQISMPYLDDDDDENHKMTPKQ 497

Query: 339 GLLLWCQRK 365
            LL W + K
Sbjct: 498 ALLAWVKSK 506


>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1457

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 41/102 (40%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIE--NIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVN 176
           FT W N  L +AG  +   ++ +D ++G  L+ LLEV++G+ + K +RG MR H + NVN
Sbjct: 31  FTKWINIQLSRAGNNVRVGDLFNDLKDGTILIALLEVLTGKKI-KRERGNMRLHHLNNVN 89

Query: 177 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI 302
            A+  +    ++L++I   +IVDGN KMTLG+IW++I  F +
Sbjct: 90  NAMMILEENDIRLINISNNDIVDGNHKMTLGLIWSVIAHFQV 131


>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 44/132 (33%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRF--HKIANVN 176
           FT WCN  +R++G  I ++   F +G+ ++ L+E ++ E   K  +   +F   K+ N  
Sbjct: 46  FTNWCNEQIRESGIVITDLAIAFNDGVTIVYLVESVA-EKKCKNCKMNPKFVQDKLENTT 104

Query: 177 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWC 356
           +AL  + + G++LV+I  ++IV+GNLK+ +G+IW +IL + I   S    + K+ LLLW 
Sbjct: 105 QALKLLENDGIQLVNIDNQDIVNGNLKLIMGLIWRLILHYQIS--SSASASGKQLLLLWL 162

Query: 357 QRKTAPYKNVNV 392
           +      K  NV
Sbjct: 163 KNALPELKIGNV 174


>SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 43/115 (37%), Positives = 59/115 (51%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKA 182
           FT W NSHL++ G  +  +  D ++G KL+LLLEV+SGE L          H + NV  A
Sbjct: 47  FTKWINSHLQRVGARVNELYHDLQDGRKLILLLEVLSGEKL---------VH-LENVG-A 95

Query: 183 LDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLL 347
            D +                DGN K+TLG+IWTIILRF +     + +   + LL
Sbjct: 96  HDIV----------------DGNQKITLGLIWTIILRFQVFYTDTDAIVLMDRLL 134


>SB_40303| Best HMM Match : CH (HMM E-Value=5.1e-10)
          Length = 82

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 41/98 (41%), Positives = 53/98 (54%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKA 182
           FT W NSHL++ G  +  +  D ++G KL+LLLEV+SGE L          H + NV  A
Sbjct: 11  FTKWINSHLQRVGARVNELYHDLQDGRKLILLLEVLSGEKL---------VH-LENVG-A 59

Query: 183 LDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 296
            D +                DGN K+TLG+IWTIILRF
Sbjct: 60  HDIV----------------DGNQKITLGLIWTIILRF 81


>SB_30962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 733

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = +3

Query: 3   FTAWCNSHLRK--AGTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVN 176
           +TAW NS L+K      I+N+  D ++G+  + L+EV++GE+L   +          NV+
Sbjct: 133 YTAWVNSQLKKRPGSRVIQNLPIDMKDGVAFIQLIEVVAGESLHLNENPTSMAAMKDNVD 192

Query: 177 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 296
           + L F+A   +K+    ++EI++G+LK  + +I  +   F
Sbjct: 193 QVLQFMAVNKIKMHHTSSKEILEGSLKAIMRLILALAAHF 232


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 11/85 (12%)
 Frame = +3

Query: 198 SKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE----------EMTAKEGLL 347
           +K VK+V I   +I DG +   LG++W+IILRF +Q++  E          +   ++ LL
Sbjct: 71  TKLVKMVGINNTDIADGKVMTILGLVWSIILRFQVQEVMNESEPSTPGGSQDFNVEKKLL 130

Query: 348 LWCQRKTAPYKN-VNVQNLHLSFKD 419
           +WC+     Y++ V +++  +S++D
Sbjct: 131 IWCEETLDGYEDVVKLKDFTVSWRD 155


>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
 Frame = -3

Query: 320 FN*DVLDGEAENNGPNHTKSHLKVTIDDFF--GTN*HKLHTF*GDEVE-CL 177
           F+ ++LD + +NNGPNH+K H KV+I DF+   T  H + T+  D+V+ CL
Sbjct: 43  FDCNILDSKPQNNGPNHSKGHFKVSIYDFYRAKTQRHVMQTYLPDQVDLCL 93


>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
 Frame = +3

Query: 3   FTAWCNSHLRKAG-TGIENIEDDFRNGLKLMLLLEVISGETLPKP-DRGKMRFHKIANVN 176
           +T W N  +++     I +I     +G  L+ +LEV++ E +P    +   R  K+ N+ 
Sbjct: 156 YTIWTNLLMKRGRHRQITDIRKSIGDGQTLVYMLEVLAQEKIPGVYAKPVTRAQKLENLQ 215

Query: 177 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWC 356
             + F+ ++ + L  I   +++DGNLK  L +   +  RF     +  + T         
Sbjct: 216 LCMSFMGNREINLQGIYVGDLIDGNLKSILALCGNLRRRFEGSSENTPDGTRPPSSQSTK 275

Query: 357 QRKTAPYKNVNVQNLH 404
             +TAP   +N    H
Sbjct: 276 TNETAPSYKMNGHTSH 291


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
 Frame = +3

Query: 48   IENIEDDFRNGLKLMLLLEVISGE-----TLPKPDRGKMRFHKIANVNKALDFIASKGVK 212
            + NI  D R+GL+L  ++E++S       TL  P     R  KI NV   L  +   GV 
Sbjct: 1057 VTNIATDLRDGLRLTRVVELLSHNWRLTSTLRVP--AISRLQKIHNVEVVLKALKDHGVP 1114

Query: 213  L-----VSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKE 338
            +       I    IVDG+ + TL ++W II+ F +  +  EE   +E
Sbjct: 1115 VGEGEGSGITPRHIVDGHREKTLNLLWMIIVNFQVNILLSEEKLKEE 1161


>SB_47648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 16/32 (50%), Positives = 25/32 (78%)
 Frame = +3

Query: 207 VKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI 302
           ++L++I   +IVDGN KMTLG+IW++I  F +
Sbjct: 1   IRLINISNNDIVDGNHKMTLGLIWSVIAHFQV 32


>SB_59804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETL 125
           FT W NS L K+G  + ++ +D  +G  L+ LLE+ISGE +
Sbjct: 56  FTKWVNSFLDKSGLHVNDLFEDLADGKILISLLEIISGEKI 96


>SB_595| Best HMM Match : CH (HMM E-Value=0)
          Length = 905

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
 Frame = +3

Query: 3    FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLE-----VISGETLPKPDRGKM--RFHK 161
            F  W NS   K    ++N+  D  +G+ L  L +     +++ + + KP   KM  +  K
Sbjct: 678  FRNWINSLGIKPF--VQNLYLDLDDGMILFQLFDQVQPGIVNYDKVNKPPFKKMGAKMKK 735

Query: 162  IANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF---AIQDISVEEMTA 332
            + N N A+         LV +G ++I DGN  + L ++W  +  +    +Q  +  E   
Sbjct: 736  LENCNYAISVADLLKFSLVGVGGKDINDGNKMLILALLWQTMRAYTLTVLQKCAGSEKPV 795

Query: 333  KEG-LLLWCQRK 365
             E  +++W   K
Sbjct: 796  TEAEIVVWVNEK 807


>SB_39164| Best HMM Match : RNB (HMM E-Value=0)
          Length = 597

 Score = 35.5 bits (78), Expect = 0.018
 Identities = 13/32 (40%), Positives = 25/32 (78%)
 Frame = +3

Query: 324 MTAKEGLLLWCQRKTAPYKNVNVQNLHLSFKD 419
           +T K  L+ WC+++T+ Y++VNV++L  S++D
Sbjct: 534 LTGKAALVEWCRQQTSGYRDVNVRDLTHSWRD 565


>SB_40161| Best HMM Match : CH (HMM E-Value=4.3e-30)
          Length = 144

 Score = 33.9 bits (74), Expect = 0.055
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +3

Query: 342 LLLWCQRKTAPYKNVNVQNLHLSFKD 419
           LL WCQ++T  YK+V++ ++  S+KD
Sbjct: 6   LLKWCQKQTKSYKHVDINDMSSSWKD 31


>SB_15403| Best HMM Match : CH (HMM E-Value=0)
          Length = 1907

 Score = 33.9 bits (74), Expect = 0.055
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +3

Query: 162 IANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDIS----VEEMT 329
           I N N A+D        L+ I  ++I +G   +TLG+IW ++  +    ++     ++  
Sbjct: 371 IENCNYAVDLGKQFNFSLIGIQGQDIHEGVQNLTLGLIWQMMRAYTYTLLARLSPDDDHM 430

Query: 330 AKEGLLLWCQRKTAPYKNVNVQNLHLSFKD 419
            +E ++ W  +     K  ++ N    FKD
Sbjct: 431 TEEKIVEWVNKTLQSKKKTHLINKGHGFKD 460



 Score = 31.5 bits (68), Expect = 0.29
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 108 ISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTII 287
           I    + KP       H+  N    ++   + G  LV+IGA ++ +G   + LG++W +I
Sbjct: 101 IDERVINKPPLKVFTIHE--NQTLVINSALAIGCNLVNIGAGDLAEGKKHLVLGVLWQVI 158


>SB_47035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 33.5 bits (73), Expect = 0.073
 Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
 Frame = -1

Query: 340 PSFAVISSTEMSWMAKRRIMVQIIPRVI-LRLPSTISSAPIDTSFTPFEAMKSSALLT-L 167
           PS A I +   S  AK  IM    P    +  P T SSA I T FTP  A   S L T  
Sbjct: 218 PSSAKIMTPFTSSRAK--IMTPFTPSSAEIMTPFTPSSAKIMTPFTPSSAKIMSPLTTSS 275

Query: 166 AILWNRILPRSGLGRVSPEMTSSSNMSFRPLRKSSSMFSMPV 41
           A + + + P S   ++   +T SS     PL  SS+    P+
Sbjct: 276 AKIMSPLTPSS--AKIMSPLTPSSAKIMSPLTTSSAKIMSPL 315


>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 321 EMTAKEGLLLWCQRKTAPYKNVNVQNLHLSF 413
           +M+    +L WC+  T  YK VN+ N   SF
Sbjct: 447 QMSVSSLILTWCKDVTEGYKGVNITNFSGSF 477


>SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)
          Length = 492

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -3

Query: 398 VLDIDILVRRCLTLTPEQQ 342
           VL++DI+V  C TL+PE+Q
Sbjct: 129 VLELDIMVTSCHTLSPEEQ 147


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 377 VRRCLTLTPEQQTFLCGHFF---N*DVLDGEAENNGPNHTKSHLKVTIDD 237
           + RCL    E +  +   F+   N D+LD  A N  PN  + HL+   D+
Sbjct: 773 IHRCLEDYLETKRLVFSRFYFLSNEDLLDILANNKNPNAVQPHLRKCFDN 822


>SB_25948| Best HMM Match : Globin (HMM E-Value=1.5e-18)
          Length = 223

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -3

Query: 416 LERQVQVLDIDILVRRCLTLTPEQQTFLCGHFFN*DVLDGEAENNGPNHTK 264
           LE     L I+I +R C    P  Q+FLC  F    V+D E       H K
Sbjct: 49  LESNKGELGIEIFLRVCY---PPAQSFLCRTFPLLHVIDAEQRKRAKRHRK 96


>SB_48827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +3

Query: 84  KLMLLLEVISGETLPKP 134
           K +L+++VISG+ LPKP
Sbjct: 625 KKLLIIQVISGQQLPKP 641


>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +3

Query: 51  ENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGA 230
           E   +  R+G+ L  +   I    +PK       F    N++K LDF   + + L  +  
Sbjct: 303 ETFAEPLRSGVILCKIANKIKSNAIPKIGESNKSFVMQENISKFLDF-CERVLGLDRLNL 361

Query: 231 EEIVDGNLKMTLGMI 275
            + VD   +  +GM+
Sbjct: 362 FQTVDLFERQNVGMV 376


>SB_33733| Best HMM Match : CYTH (HMM E-Value=2.1e-05)
          Length = 230

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 142 AKCDSTKSLTSTRHSTSSPQKV*S-LCQLVPKKSSM 246
           A+CD T S+T   H TS   K+ + L + VP  +S+
Sbjct: 114 ARCDPTISITDKYHETSDETKIMTELSKHVPMATSL 149


>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
          Length = 1383

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 89   ELQAIAEVVLDVLDAGASFSEVTVAPCCE 3
            EL A  + V DV   G  F+E+ V P CE
Sbjct: 1091 ELVAAIKSVTDVRYPGIKFNELLVCPVCE 1119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,420
Number of Sequences: 59808
Number of extensions: 245546
Number of successful extensions: 800
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -