Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1196
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   9.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   9.9  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           20   9.9  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           20   9.9  

>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 51 ENIEDDFRNGL 83
          E  EDDFRNG+
Sbjct: 41 EKKEDDFRNGI 51


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 39  GTGIENIEDDFRNGLKLMLLLEV 107
           G+GIE+I++   NGL  + +L +
Sbjct: 827 GSGIESIQNRTFNGLNNLQILHL 849


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 217 TSFTPFEAMKSSALLTLAILWNRILPRSGLG 125
           T F P   + +S+ +T  + WN +  R  +G
Sbjct: 306 TVFIPGIILVTSSFITFWLEWNAVPARVMIG 336


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 217 TSFTPFEAMKSSALLTLAILWNRILPRSGLG 125
           T F P   + +S+ +T  + WN +  R  +G
Sbjct: 275 TVFIPGIILVTSSFITFWLEWNAVPARVMIG 305


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 217 TSFTPFEAMKSSALLTLAILWNRILPRSGLG 125
           T F P   + +S+ +T  + WN +  R  +G
Sbjct: 326 TVFIPGIILVTSSFITFWLEWNAVPARVMIG 356


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 217 TSFTPFEAMKSSALLTLAILWNRILPRSGLG 125
           T F P   + +S+ +T  + WN +  R  +G
Sbjct: 275 TVFIPGIILVTSSFITFWLEWNAVPARVMIG 305


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 291 RFAIQDISVEEMTAKEGLLLW 353
           + A +DI V     K+G +LW
Sbjct: 247 KVAKEDIQVRFFEEKDGQVLW 267


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 291 RFAIQDISVEEMTAKEGLLLW 353
           + A +DI V     K+G +LW
Sbjct: 247 KVAKEDIQVRFFEEKDGQVLW 267


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 366 SYVDTRATDLPLRSFLQLRCLG 301
           +++DT   +LP     Q  C G
Sbjct: 67  AFMDTPLNELPANKRFQAHCAG 88


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 366 SYVDTRATDLPLRSFLQLRCLG 301
           +++DT   +LP     Q  C G
Sbjct: 67  AFMDTPLNELPANKRFQAHCAG 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,867
Number of Sequences: 438
Number of extensions: 1966
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)