Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1196
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t...    49   1e-06
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ...    48   3e-06
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ...    48   3e-06
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ...    45   2e-05
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s...    43   1e-04
At4g21820.1 68417.m03156 calmodulin-binding family protein conta...    32   0.14 
At5g10160.1 68418.m01176 beta-hydroxyacyl-ACP dehydratase, putat...    28   3.0  
At1g06590.1 68414.m00698 expressed protein                             28   3.0  
At2g27260.1 68415.m03276 expressed protein                             27   5.2  
At5g44820.1 68418.m05493 expressed protein similar to unknown pr...    27   6.8  
At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2) ide...    27   6.8  
At2g23540.1 68415.m02809 GDSL-motif lipase/hydrolase family prot...    27   6.8  
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit...    26   9.0  
At1g17820.1 68414.m02206 expressed protein                             26   9.0  

>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893
          Length = 687

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
 Frame = +3

Query: 48  IENIEDDFRNGLKLMLLLEVISGETL-----PKPDRGKMRFHKIANVNKALDFIASKGVK 212
           + N+ +D RNG  L+ +L+ +S  ++      KP   KM F K+ N N+ +         
Sbjct: 411 VNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPI-KMPFRKVENCNQVIKIGKQLKFS 469

Query: 213 LVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI--SVEEMT-AKE----GLLLWCQRK 365
           LV++   +IV GN K+ LG++W  ++RF +  +  S+   T  KE     +L W  RK
Sbjct: 470 LVNVAGNDIVQGNKKLILGLLWQ-LMRFHMLQLLKSLRSRTLGKEMTDADILSWANRK 526


>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 652

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLP-----KPDRGKMRFHKIA 167
           F  W NS    A T ++N+ +D RNG  L+ +L+ +S  ++      KP   KM F K+ 
Sbjct: 394 FRHWMNS--LGAVTYVDNVFEDVRNGWVLLEVLDKVSPGSVNWKHANKPPI-KMPFKKVE 450

Query: 168 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI 311
           N N+ +         LV++   +I+ GN K+ L  +W  ++R+ +  I
Sbjct: 451 NCNQVIKIGKELNFSLVNVAGHDIMQGNKKLLLAFLWQ-LMRYTMLQI 497



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 12  WCNSHLRKAG--TGIENIEDDFRNGLKLMLLLEVISGE 119
           W N HL+KAG    + N   D ++G     LL  ++ E
Sbjct: 270 WMNFHLKKAGYEKQVTNFSSDVKDGEAYAYLLNALAPE 307


>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893, fimbrin [Schizosaccharomyces pombe]
           GI:3057144; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 687

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETLP-----KPDRGKMRFHKIA 167
           F  W NS      T + N+ +D RNG  L+ +L+ +S  ++      KP   KM F K+ 
Sbjct: 398 FRLWINS--LGTATYVNNVFEDLRNGWVLLEVLDKVSPGSVNWKHANKPPI-KMPFKKVE 454

Query: 168 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTII 287
           N N+ +         LV++   +IV GN K+ L  +W ++
Sbjct: 455 NCNEVIKIGKELRFSLVNVAGNDIVQGNKKLLLAFLWQLM 494



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 12  WCNSHLRKAG--TGIENIEDDFRNGLKLMLLLEVISGE 119
           W N HL+KAG    + N   D ++G     LL  ++ E
Sbjct: 276 WMNFHLKKAGYEKQVTNFSSDLKDGEAYAYLLNALAPE 313


>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 714

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
 Frame = +3

Query: 48  IENIEDDFRNGLKLMLLLEVI-----SGETLPKPDRGKMRFHKIANVNKALDFIASKGVK 212
           + N+ +D RNG  L+ +++ +     + +   KP   KM F K+ N N+ +         
Sbjct: 412 VNNVFEDVRNGWILLEVVDKVYPGSVNWKQASKPPI-KMPFRKVENCNQVVKIGKEMRFS 470

Query: 213 LVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV-------EEMTAKEGLLLWCQRK 365
           LV++   +IV GN K+ LG +W ++    +Q +         ++MT  E ++ W  RK
Sbjct: 471 LVNVAGNDIVQGNKKLILGFLWQLMRTHMLQLLKSLRSRTRGKDMTDSE-IISWANRK 527



 Score = 29.9 bits (64), Expect = 0.73
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 168 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEM 326
           N    L+   + G  +V+IG +++ +G   + LG+I  +I    + D+S+++M
Sbjct: 198 NHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLSLKKM 250


>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
           similarity to fimbrin-like protein AtFim2 [Arabidopsis
           thaliana] GI:2737926; contains Pfam profile PF00307:
           Calponin homology (CH) domain
          Length = 654

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
 Frame = +3

Query: 3   FTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLE-----VISGETLPKPDRGKMRFHKIA 167
           F  W NS        I N+ +D R+G  L+  L+     +++ +   KP   K+ F K+ 
Sbjct: 400 FRFWINSF--DGSVYINNVFEDLRDGWILLQTLDKVSPGIVNWKVSSKPPI-KLPFKKVE 456

Query: 168 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTII 287
           N N+ +         LV+I   +IV GN K+ L  +W ++
Sbjct: 457 NCNQVVKLGKQLKFSLVNIAGNDIVQGNKKLILAYLWQLM 496


>At4g21820.1 68417.m03156 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 1088

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +3

Query: 96  LLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKL-----VSIGAEEIVDGNLKM 260
           L+ V+  + +  P   + +   +AN   AL ++   GV L     + I  E++ DG+ ++
Sbjct: 398 LMRVLIKQKMVVPSDNRKK--NLANCRIALQYLKDAGVSLKDDEGMMITGEDVADGDREL 455

Query: 261 TLGMIWTIILRFAI 302
           T+ ++W I +   +
Sbjct: 456 TISLLWNIFVHLQL 469


>At5g10160.1 68418.m01176 beta-hydroxyacyl-ACP dehydratase, putative
           similar to beta-hydroxyacyl-ACP dehydratase from
           Toxoplasma gondii [GI:3850997]; contains Pfam profile
           PF01377 Thioester dehydratase
          Length = 219

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -1

Query: 121 VSPEMTSSSNMSFRPLRKSSSM 56
           +SP +  SS+++FRP R+SSS+
Sbjct: 25  LSPPLLRSSSVAFRPKRRSSSL 46


>At1g06590.1 68414.m00698 expressed protein
          Length = 916

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 259 ILRLPSTISSAPIDTSFTPFEAMKSSALLTLAILW 155
           +L LP  ++S     SF   + +K+SA LTLA LW
Sbjct: 761 VLGLPYALASISFCQSFN-LDLLKASATLTLAELW 794


>At2g27260.1 68415.m03276 expressed protein
          Length = 243

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +3

Query: 69  FRNGLKLMLLLEVISGETLPKP-DRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVD 245
           +   L  M    V   ET  +P D+GK +   + N   ++      G  + SIG E  V 
Sbjct: 129 YETALCAMYYNRVSLSETRLQPFDQGK-KDQTVVNATLSVSGTYVDGRLVDSIGKERSVK 187

Query: 246 GNLKMTLGMIWTIILRF 296
           GN++  L MI  +  R+
Sbjct: 188 GNVEFDLRMISYVTFRY 204


>At5g44820.1 68418.m05493 expressed protein similar to unknown
           protein (pir||T04881)
          Length = 367

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = -1

Query: 262 VILRLPSTISSAPIDTSFTPFEAMKSSALLTLAILWNRILPRSGLGRVSPEMTSSSNMSF 83
           +IL L  T S   +  +  P + +  S L +L    + +LP      +SPE T+   +SF
Sbjct: 34  LILFLGLTASCLVLYKTAYPLQRLNVSNLTSLQASPSPLLPNLNSSEISPE-TTKPKLSF 92

Query: 82  RPLRKSSS 59
           + + +++S
Sbjct: 93  KEILENAS 100


>At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2)
           identical to phage-type RNA polymerase rpoT2
           [Arabidopsis thaliana] GI:11340683
          Length = 1011

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = -1

Query: 256 LRLPSTISSAPIDTSFTPFEAMKSSALLTLAILWNRILPRSGLGRVSPEMTSSSNMSFR 80
           L  P   S  P+  SF  +  +   A+   A   N      GL   SPE   S N+SFR
Sbjct: 23  LHKPFISSPNPVSQSFPMWRNIAKQAISRSAARLNVSSQTRGLLVSSPESIFSKNLSFR 81


>At2g23540.1 68415.m02809 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL1 GI:15054382 from
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 387

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 144 KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNL 254
           + +F  +    KA D+IA K +  ++IGA + ++  L
Sbjct: 162 RKQFDDLLGKEKAKDYIAKKSIFSITIGANDFLNNYL 198


>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 314

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 39  GTGIENIEDDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKA 182
           G G+EN+   + +    M L+   +G TLP P    +R+H    ++KA
Sbjct: 211 GCGLENVLMSWGHD-DYMYLVAKENGSTLPSPGLFIIRYHSFYPLHKA 257


>At1g17820.1 68414.m02206 expressed protein
          Length = 803

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 219 SIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLL---WCQRKTAPYKNVN 389
           S+G  +I + ++ M L   +   +R A+   + E +T    +     W QRK AP+  +N
Sbjct: 559 SVGEHKITNSHVAMFLINRFKTAIREAVVLPNCESLTIPWMIAEKDDWVQRKAAPFMWLN 618

Query: 390 VQNLH 404
            +N H
Sbjct: 619 QENDH 623


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,904,335
Number of Sequences: 28952
Number of extensions: 178969
Number of successful extensions: 623
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)