Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1192
(337 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q96K17 Cluster: Transcription factor BTF3 homolog 4; n=... 75 4e-13
UniRef50_Q13892 Cluster: Transcription factor BTF3 homolog 3; n=... 66 2e-10
UniRef50_Q2PQI9 Cluster: BTF3-like transcription factor; n=6; Ma... 56 1e-07
UniRef50_UPI0000D9DD8A Cluster: PREDICTED: similar to basic tran... 56 2e-07
UniRef50_Q5YET6 Cluster: Transcription factor BTF3; n=1; Bigelow... 56 2e-07
UniRef50_Q93ZB5 Cluster: At1g17880/F2H15_10; n=20; Viridiplantae... 55 4e-07
UniRef50_Q2U6N1 Cluster: Nascent polypeptide-associated complex ... 50 1e-05
UniRef50_UPI000155321F Cluster: PREDICTED: similar to Btf3 prote... 48 5e-05
UniRef50_Q5CX56 Cluster: BTF domain, basal transcription factor;... 46 2e-04
UniRef50_A0CH86 Cluster: Chromosome undetermined scaffold_18, wh... 45 4e-04
UniRef50_Q4UDF4 Cluster: Transcription factor btf3 homolog, puta... 44 9e-04
UniRef50_UPI0000D9B4C6 Cluster: PREDICTED: basic transcription f... 42 0.004
UniRef50_Q54TR8 Cluster: Putative uncharacterized protein; n=1; ... 40 0.008
UniRef50_Q6C2F3 Cluster: Nascent polypeptide-associated complex ... 40 0.008
UniRef50_Q0IGS9 Cluster: RT01104p; n=4; Drosophila melanogaster|... 36 0.24
UniRef50_Q6A1N2 Cluster: Transcription factor BTF3; n=1; Euplote... 35 0.31
UniRef50_Q751F1 Cluster: Nascent polypeptide-associated complex ... 34 0.55
UniRef50_UPI0000F2C851 Cluster: PREDICTED: similar to BTF3a; n=1... 33 1.7
UniRef50_A5DF06 Cluster: Nascent polypeptide-associated complex ... 33 1.7
UniRef50_Q8LC03 Cluster: Homeobox-leucine zipper protein ATHB-13... 31 3.8
UniRef50_Q9VY38 Cluster: CG18157-PA; n=1; Drosophila melanogaste... 31 5.1
UniRef50_A2GI66 Cluster: Putative uncharacterized protein; n=14;... 31 6.7
UniRef50_Q02642 Cluster: Nascent polypeptide-associated complex ... 31 6.7
UniRef50_UPI0001553282 Cluster: PREDICTED: RIKEN cDNA 4930505D03... 30 8.9
UniRef50_A7A714 Cluster: Putative uncharacterized protein; n=1; ... 30 8.9
UniRef50_Q4Q138 Cluster: Basic transcription factor 3a, putative... 30 8.9
>UniRef50_Q96K17 Cluster: Transcription factor BTF3 homolog 4; n=59;
Eukaryota|Rep: Transcription factor BTF3 homolog 4 -
Homo sapiens (Human)
Length = 158
Score = 74.5 bits (175), Expect = 4e-13
Identities = 36/56 (64%), Positives = 39/56 (69%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
+KKVVH TA DD VN I GIEEVNMIK+DGTVIHFNNPK QASL+
Sbjct: 24 KKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLS 79
Score = 44.8 bits (101), Expect = 4e-04
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +1
Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
MN EKL KLQ+QVRIGGKGT RRK++
Sbjct: 1 MNQEKLAKLQAQVRIGGKGTARRKKK 26
>UniRef50_Q13892 Cluster: Transcription factor BTF3 homolog 3; n=85;
Fungi/Metazoa group|Rep: Transcription factor BTF3
homolog 3 - Homo sapiens (Human)
Length = 214
Score = 65.7 bits (153), Expect = 2e-10
Identities = 35/61 (57%), Positives = 37/61 (60%)
Frame = +2
Query: 155 AHRDARKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASL 334
AHR +KKV H TA DD VN I GIE+VNM GTVIHFNNPK QASL
Sbjct: 56 AHR--KKKVFHRTATADDKKLQFSLKKLQVNNISGIEKVNMFTNQGTVIHFNNPKFQASL 113
Query: 335 A 337
A
Sbjct: 114 A 114
Score = 36.7 bits (81), Expect = 0.10
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 82 TLKNSRMNSEKLKKLQSQVRIGGKGTPRRKEE 177
T +++ KL KLQ+QVRIGGKGT RK++
Sbjct: 30 TCRSTDHEPGKLAKLQAQVRIGGKGTAHRKKK 61
>UniRef50_Q2PQI9 Cluster: BTF3-like transcription factor; n=6;
Magnoliophyta|Rep: BTF3-like transcription factor -
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Length = 162
Score = 56.4 bits (130), Expect = 1e-07
Identities = 30/56 (53%), Positives = 33/56 (58%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
+KK VH T TDD VN IP IEEVN+ KED VI F NPK QAS+A
Sbjct: 24 KKKAVHKTTTTDDKRLQSTLKRIGVNGIPAIEEVNIFKED-VVIQFVNPKVQASIA 78
Score = 36.7 bits (81), Expect = 0.10
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
MN EKL+K+ VR GGKGT RRK++
Sbjct: 1 MNVEKLQKMAGSVRTGGKGTMRRKKK 26
>UniRef50_UPI0000D9DD8A Cluster: PREDICTED: similar to basic
transcription factor 3; n=1; Macaca mulatta|Rep:
PREDICTED: similar to basic transcription factor 3 -
Macaca mulatta
Length = 372
Score = 56.0 bits (129), Expect = 2e-07
Identities = 27/49 (55%), Positives = 29/49 (59%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNP 316
+KKVVH TA DD VN I GIEEVN+ GTVIHFNNP
Sbjct: 29 KKKVVHRTATADDKKLQFSLKKLGVNDISGIEEVNVFTNQGTVIHFNNP 77
Score = 44.4 bits (100), Expect = 5e-04
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +1
Query: 85 LKNSRMNSEKLKKLQSQVRIGGKGTPRRKEE 177
+K + MN EKL KLQ+QVRI GKGT RRK++
Sbjct: 1 MKETIMNQEKLAKLQAQVRISGKGTARRKKK 31
>UniRef50_Q5YET6 Cluster: Transcription factor BTF3; n=1;
Bigelowiella natans|Rep: Transcription factor BTF3 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 165
Score = 55.6 bits (128), Expect = 2e-07
Identities = 26/56 (46%), Positives = 33/56 (58%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
R+K + + DD V IP IEEVN+ K+DGTVIHF +PK QAS+A
Sbjct: 29 RRKTIRKNLSHDDKRLTNTLKRLNVRDIPAIEEVNLFKDDGTVIHFASPKVQASIA 84
Score = 30.7 bits (66), Expect = 6.7
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +1
Query: 103 NSEKLKKLQSQ---VRIGGKGTPRRKEEGCSRYCGH 201
N +KLK+L S+ VRIGGKG+ RR+ + + H
Sbjct: 4 NPDKLKRLTSKSNSVRIGGKGSIRRRRKTIRKNLSH 39
>UniRef50_Q93ZB5 Cluster: At1g17880/F2H15_10; n=20;
Viridiplantae|Rep: At1g17880/F2H15_10 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 165
Score = 54.8 bits (126), Expect = 4e-07
Identities = 29/56 (51%), Positives = 34/56 (60%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
+KK VH T TDD VN+IP IEEVN+ K+D VI F NPK QAS+A
Sbjct: 24 KKKAVHKTNTTDDKRLQSTLKRIGVNSIPPIEEVNIFKDD-VVIQFINPKVQASIA 78
Score = 36.3 bits (80), Expect = 0.14
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
MN EKL K+ + VR GGKGT RRK++
Sbjct: 1 MNREKLMKMANTVRTGGKGTVRRKKK 26
>UniRef50_Q2U6N1 Cluster: Nascent polypeptide-associated complex
subunit beta; n=4; Pezizomycotina|Rep: Nascent
polypeptide-associated complex subunit beta -
Aspergillus oryzae
Length = 196
Score = 50.0 bits (114), Expect = 1e-05
Identities = 25/53 (47%), Positives = 28/53 (52%)
Frame = +2
Query: 176 KVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASL 334
K VH ++ DD V I IEEVNM KEDG VIHF PK AS+
Sbjct: 67 KKVHKSSGADDKKLQATLKKMNVQPIQAIEEVNMFKEDGNVIHFGAPKVHASV 119
>UniRef50_UPI000155321F Cluster: PREDICTED: similar to Btf3 protein;
n=3; Mus musculus|Rep: PREDICTED: similar to Btf3
protein - Mus musculus
Length = 260
Score = 47.6 bits (108), Expect = 5e-05
Identities = 29/66 (43%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNT----------IPGIEEVNMIKEDGTVIHFNNPK 319
RKKV H TA+ D N + GIEEVN GTV+HFNNPK
Sbjct: 42 RKKVAHRTASADGKTTTTNNKTKQNNNKKKTVVLLKEVRGIEEVNTFTNQGTVVHFNNPK 101
Query: 320 AQASLA 337
QASLA
Sbjct: 102 VQASLA 107
>UniRef50_Q5CX56 Cluster: BTF domain, basal transcription factor;
n=3; Cryptosporidium|Rep: BTF domain, basal
transcription factor - Cryptosporidium parvum Iowa II
Length = 186
Score = 45.6 bits (103), Expect = 2e-04
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 248 TIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
T P I EV M+K+DGT +HF+NPK QAS+A
Sbjct: 87 TFPAIGEVTMMKKDGTCLHFSNPKLQASVA 116
>UniRef50_A0CH86 Cluster: Chromosome undetermined scaffold_18, whole
genome shotgun sequence; n=4; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_18, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 168
Score = 44.8 bits (101), Expect = 4e-04
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASL 334
+ K VH T DD V + I+EVN K+D T+IHF+ P+ QA++
Sbjct: 36 KHKNVHQTQINDDKKLKQVIKKFGVQQLGNIDEVNFFKDDNTIIHFSKPEVQAAI 90
>UniRef50_Q4UDF4 Cluster: Transcription factor btf3 homolog,
putative; n=3; Piroplasmida|Rep: Transcription factor
btf3 homolog, putative - Theileria annulata
Length = 164
Score = 43.6 bits (98), Expect = 9e-04
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 167 ARKKVVHVTAAT-DDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQAS 331
AR+K+ T DD IPGIEEV ++KEDGT + F+NPK Q +
Sbjct: 41 ARRKLKKTTKFVGDDKRLQFALRSIGAANIPGIEEVQILKEDGTFLTFSNPKIQTA 96
>UniRef50_UPI0000D9B4C6 Cluster: PREDICTED: basic transcription
factor 3 isoform 1; n=4; Eutheria|Rep: PREDICTED: basic
transcription factor 3 isoform 1 - Macaca mulatta
Length = 168
Score = 41.5 bits (93), Expect = 0.004
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +2
Query: 266 EVNMIKEDGTVIHFNNPKAQASLA 337
+VNM GTVIHFNNPK QASLA
Sbjct: 67 KVNMFTNQGTVIHFNNPKVQASLA 90
Score = 35.9 bits (79), Expect = 0.18
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +1
Query: 85 LKNSRMNSEKLKKLQSQVRIGGK 153
+K + MN EKL KLQ+QVRIGGK
Sbjct: 45 MKETIMNQEKLAKLQAQVRIGGK 67
>UniRef50_Q54TR8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 142
Score = 40.3 bits (90), Expect = 0.008
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 170 RKKVVHV-TAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQAS 331
+++V H T + DD V I +EE N K DG +IHF NP Q +
Sbjct: 27 KQQVTHKSTTSVDDKKLHVKLANLGVKPIGAVEEANFFKADGNIIHFKNPSVQTA 81
>UniRef50_Q6C2F3 Cluster: Nascent polypeptide-associated complex
subunit beta; n=1; Yarrowia lipolytica|Rep: Nascent
polypeptide-associated complex subunit beta - Yarrowia
lipolytica (Candida lipolytica)
Length = 162
Score = 40.3 bits (90), Expect = 0.008
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = +2
Query: 173 KKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
KKV + D+ I GI EVNM KEDGTV+HF + S+A
Sbjct: 30 KKVAGRNISEDEKKLSATLKKFNAQEITGISEVNMFKEDGTVLHFPKVHVEGSVA 84
>UniRef50_Q0IGS9 Cluster: RT01104p; n=4; Drosophila
melanogaster|Rep: RT01104p - Drosophila melanogaster
(Fruit fly)
Length = 262
Score = 35.5 bits (78), Expect = 0.24
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +1
Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
M+ +KLKK++ VRIGGKG+ RRK +
Sbjct: 1 MDFKKLKKMEEAVRIGGKGSMRRKHK 26
>UniRef50_Q6A1N2 Cluster: Transcription factor BTF3; n=1; Euplotes
vannus|Rep: Transcription factor BTF3 - Euplotes vannus
Length = 157
Score = 35.1 bits (77), Expect = 0.31
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 173 KKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASL 334
KKV +D V ++P IEEVN K+D TV++F P S+
Sbjct: 34 KKVNKKADKNEDKKLKQQLKKFNVQSLPDIEEVNFFKDDDTVMNFKRPAVDFSV 87
>UniRef50_Q751F1 Cluster: Nascent polypeptide-associated complex
subunit beta; n=4; Saccharomycetales|Rep: Nascent
polypeptide-associated complex subunit beta - Ashbya
gossypii (Yeast) (Eremothecium gossypii)
Length = 161
Score = 34.3 bits (75), Expect = 0.55
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +2
Query: 161 RDARKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQAS 331
R KK +A DD T+ +EE N K+DG+V+HFN Q +
Sbjct: 25 RKLAKKSGTASANKDDSKLQAQLAKLKAVTMDQVEEANFFKDDGSVLHFNKVGVQVA 81
>UniRef50_UPI0000F2C851 Cluster: PREDICTED: similar to BTF3a; n=1;
Monodelphis domestica|Rep: PREDICTED: similar to BTF3a -
Monodelphis domestica
Length = 131
Score = 32.7 bits (71), Expect = 1.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQAS 331
+KKV+ T + D VN EEV + GT+I+FN+P+ A+
Sbjct: 49 KKKVIPRTVSADYEKLQISLKKREVNNTSVTEEVTVFNNLGTIIYFNSPEVLAA 102
>UniRef50_A5DF06 Cluster: Nascent polypeptide-associated complex
subunit beta; n=2; Pichia guilliermondii|Rep: Nascent
polypeptide-associated complex subunit beta - Pichia
guilliermondii (Yeast) (Candida guilliermondii)
Length = 151
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQAS 331
R K V + DD + +EE N KEDG V+HF Q++
Sbjct: 23 RVKAKKVKSEQDDTKLMEALGKLKATKVNAVEEANFFKEDGKVLHFKRVGVQSA 76
>UniRef50_Q8LC03 Cluster: Homeobox-leucine zipper protein ATHB-13;
n=5; core eudicotyledons|Rep: Homeobox-leucine zipper
protein ATHB-13 - Arabidopsis thaliana (Mouse-ear cress)
Length = 294
Score = 31.5 bits (68), Expect = 3.8
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +1
Query: 73 TQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKEEGCSRYCGHR*QKTAVIAQKVVSEHN 252
+Q K R+N E++K L+ +G K P RK + +R G + ++ A+ Q +
Sbjct: 80 SQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQ-LARALGLQPRQIAIWFQNRRARWK 138
Query: 253 SWHRRGKYDQRGRYCDTL 306
+ YD R DTL
Sbjct: 139 TKQLEKDYDTLKRQFDTL 156
>UniRef50_Q9VY38 Cluster: CG18157-PA; n=1; Drosophila
melanogaster|Rep: CG18157-PA - Drosophila melanogaster
(Fruit fly)
Length = 197
Score = 31.1 bits (67), Expect = 5.1
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
M+ + LKK++ VRIGG G+ RRK +
Sbjct: 1 MDFKTLKKMEEAVRIGGNGSMRRKHK 26
>UniRef50_A2GI66 Cluster: Putative uncharacterized protein; n=14;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 397
Score = 30.7 bits (66), Expect = 6.7
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 336 ASDACAFGLLKCITVPSSLIIFTSSMPGIVFTDNFLSDDCSFLSSVAAVT*TTFFL-ASR 160
+S C K S +SS + T FLS CSFLSS T +FL +SR
Sbjct: 277 SSSRCFLSSSKYFLSCSRCSFLSSSCSFLSSTKYFLSSSCSFLSS------TKYFLFSSR 330
Query: 159 CALTADAY 136
C L++ Y
Sbjct: 331 CFLSSTKY 338
>UniRef50_Q02642 Cluster: Nascent polypeptide-associated complex
subunit beta-1; n=5; Saccharomycetales|Rep: Nascent
polypeptide-associated complex subunit beta-1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 157
Score = 30.7 bits (66), Expect = 6.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 248 TIPGIEEVNMIKEDGTVIHFNNPKAQAS 331
TI + E N K+DG V+HFN Q +
Sbjct: 55 TIDNVAEANFFKDDGKVMHFNKVGVQVA 82
>UniRef50_UPI0001553282 Cluster: PREDICTED: RIKEN cDNA 4930505D03
gene; n=2; Mus musculus|Rep: PREDICTED: RIKEN cDNA
4930505D03 gene - Mus musculus
Length = 963
Score = 30.3 bits (65), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 178 GCSRYCGHR*QKTAVIAQKVVSEHNSWHRRGKYDQ 282
GCS YCG ++ V+ ++V+ + W++ Y Q
Sbjct: 339 GCSSYCGQEAEQDRVVLKRVLLAYARWNKNVGYCQ 373
>UniRef50_A7A714 Cluster: Putative uncharacterized protein; n=1;
Bifidobacterium adolescentis L2-32|Rep: Putative
uncharacterized protein - Bifidobacterium adolescentis
L2-32
Length = 76
Score = 30.3 bits (65), Expect = 8.9
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 40 SVIKKCPVLT-LTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKEE 177
+V ++CPV+ QF N+R+N L+ + + G KG PR+ ++
Sbjct: 30 AVCRQCPVIDECRQFADHNNRINGYPLQGIWGGRQYGVKGRPRKAQQ 76
>UniRef50_Q4Q138 Cluster: Basic transcription factor 3a, putative;
n=6; Trypanosomatidae|Rep: Basic transcription factor
3a, putative - Leishmania major
Length = 103
Score = 30.3 bits (65), Expect = 8.9
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASL 334
R H + DD V I+E ++DG+ +F+ PK QAS+
Sbjct: 25 RTTKAHHKSTGDDKKVQVTLRRLGVTPFSDIDEAVFYRQDGSTYYFSKPKVQASM 79
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 301,508,557
Number of Sequences: 1657284
Number of extensions: 5093756
Number of successful extensions: 12308
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 12031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12303
length of database: 575,637,011
effective HSP length: 87
effective length of database: 431,453,303
effective search space used: 10354879272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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