Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1192
         (337 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   0.37 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   0.37 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    20   6.0  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    20   8.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 0.37
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 34  LNSVIKKCPVLTLTQFTLKNSRMNSEK 114
           LN  IKK P+  +  FT+   ++N  +
Sbjct: 266 LNLTIKKMPIAIVAPFTIVEPKLNKHE 292


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 0.37
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 34  LNSVIKKCPVLTLTQFTLKNSRMNSEK 114
           LN  IKK P+  +  FT+   ++N  +
Sbjct: 158 LNLTIKKMPIAIVAPFTIVEPKLNKHE 184


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 211 FVICGRSNVNN 179
           FVICG S++ N
Sbjct: 325 FVICGESDIFN 335


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 187 VNNLLPCV 164
           +NN+LPCV
Sbjct: 325 MNNILPCV 332


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,475
Number of Sequences: 336
Number of extensions: 1414
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6579502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)