Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1192
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    41   4e-05
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    26   1.3  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   1.8  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   4.1  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    24   5.4  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    23   9.4  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    23   9.4  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 41.1 bits (92), Expect = 4e-05
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = +2

Query: 161 RDARKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASL 334
           R  +K      +A DD           +  + GI+EVNM KEDG VI+F  P   +SL
Sbjct: 23  RKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVNMFKEDGGVINFRAPTVHSSL 80



 Score = 38.3 bits (85), Expect = 3e-04
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +1

Query: 100 MNSEKLKKLQSQVRIGGKGTPRRK 171
           M+  KL KLQ+  RIGGKGTPRRK
Sbjct: 1   MDPSKLAKLQAGARIGGKGTPRRK 24


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 37  NSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGG-KGTPRRKEEGCSRYCGHR 204
           NSV++K         +  NSR+NS    +  S V + G  G+P  K +  S   G R
Sbjct: 131 NSVVEKISQKNQEARSRANSRVNSRANSRANSSVSLAGMDGSPNWKRKMKSAVFGSR 187


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 106  SEKLKKLQSQVRIGGKGTPRRKEEGCSRYC 195
            S  L +  S  R G K TP  K++   RYC
Sbjct: 1493 STPLSQESSLARSGRKNTPSYKQKALRRYC 1522


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 134 KYASAVRAHRDARKKVVHVTAATD 205
           KY + V  HR   K +VH +   D
Sbjct: 28  KYKNEVEPHRSGPKNIVHTSTKAD 51


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 184 NNLLPCVSVCPYRRCVLATG 125
           N  +  +S CP++R +LATG
Sbjct: 364 NAAVKALSFCPWQRSLLATG 383


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 322 CLRVVKVYHSTVLFDHIYLFD 260
           C R+V + H TV    I+LFD
Sbjct: 95  CTRLVLLSHFTVELPQIWLFD 115


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 80  NCVNVKTGHFFMTLFSYYKTRQSRVF 3
           N +  K GHFF   F Y   R  ++F
Sbjct: 662 NLLITKDGHFFHADFGYILGRDPKLF 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,264,295
Number of Sequences: 5004
Number of extensions: 21802
Number of successful extensions: 51
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)