Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1192
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 59 8e-10
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 58 1e-09
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 50 5e-07
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118... 31 0.31
11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672... 27 2.9
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 27 3.8
05_04_0228 - 19224901-19224991,19225095-19225219,19225293-192254... 26 6.6
03_05_0925 - 28864395-28864502,28865107-28865242,28865511-288656... 26 6.6
11_06_0050 + 19631164-19631987,19632103-19634023 26 8.7
08_01_0911 - 8976912-8977127,8977743-8977867,8977937-8978058,897... 26 8.7
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390... 26 8.7
05_06_0112 + 25654143-25655060 26 8.7
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 59.3 bits (137), Expect = 8e-10
Identities = 35/72 (48%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Frame = +2
Query: 131 RKYASAVRAHRDA----RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTV 298
+K A AVR +KK VH T TDD VNTIPGIEEVN+ K+D V
Sbjct: 8 KKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VV 66
Query: 299 IHFNNPKAQASL 334
I F NPK QAS+
Sbjct: 67 IQFLNPKVQASI 78
Score = 35.1 bits (77), Expect = 0.014
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
MN +KLKK+ VR GGKG+ RRK++
Sbjct: 2 MNVDKLKKMAGAVRTGGKGSVRRKKK 27
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 58.4 bits (135), Expect = 1e-09
Identities = 34/72 (47%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +2
Query: 131 RKYASAVRAHRDA----RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTV 298
+K A AVR +KK VH T TDD VN IPGIEEVN+ K+D V
Sbjct: 447 KKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIFKDD-VV 505
Query: 299 IHFNNPKAQASL 334
I F NPK QAS+
Sbjct: 506 IQFQNPKVQASI 517
Score = 35.1 bits (77), Expect = 0.014
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
MN +KLKK+ VR GGKG+ RRK++
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKK 466
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 50.0 bits (114), Expect = 5e-07
Identities = 26/50 (52%), Positives = 29/50 (58%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPK 319
+KK VH T TDD VNTIP IEEVN+ K+D VI F NPK
Sbjct: 16 KKKAVHKTGTTDDKRLQSTLKRVGVNTIPAIEEVNIFKDD-LVIQFVNPK 64
>08_02_0550 +
18509365-18509589,18509668-18510644,18510828-18511802,
18511885-18512142,18512216-18512326,18512418-18512496,
18512595-18512687,18512773-18512958
Length = 967
Score = 30.7 bits (66), Expect = 0.31
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +1
Query: 55 CPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKEEGCSRYCGHR*QKTAVIAQK 234
CP + + R + K++ + RIG KG P E+ CS+Y Q A++
Sbjct: 104 CPTASSKPKKRRGERGKNVLSKEVHALTRIGEKGEPLSPEDVCSKYSN---QCGAIVRDN 160
Query: 235 VVSEHNSWHR 264
V W +
Sbjct: 161 VEITFKDWKK 170
>11_05_0065 +
18766566-18766576,18767023-18767083,18767170-18767268,
18767346-18767467,18767577-18767673,18767778-18767824,
18768020-18768203,18768349-18768400,18768795-18768985,
18769072-18770020,18770866-18771022,18771134-18771206,
18771292-18771465,18771880-18771993,18772110-18772236,
18772331-18772443,18772614-18772729,18772847-18773000
Length = 946
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 193 SNVNNLLPCVSVCPYRRCVLATGVSLI 113
+NVNNL P +S + RC++A L+
Sbjct: 430 NNVNNLTPLLSNERFHRCLIACSAELV 456
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +1
Query: 88 KNSRMNSEKLKKLQSQVRIGGKGTPRRKEEGCSRYCGHR*QKTAVIAQKVVSEHNSWHRR 267
K R+N E+++ L+ +G K P RK + +R G + ++ A+ Q + +
Sbjct: 130 KKRRLNVEQVRTLEKNFELGNKLEPERKMQ-LARALGLQPRQVAIWFQNRRARWKTKQLE 188
Query: 268 GKYDQRGRYCDTL 306
YD R D +
Sbjct: 189 KDYDALKRQLDAV 201
>05_04_0228 -
19224901-19224991,19225095-19225219,19225293-19225410,
19225554-19225618,19225760-19225839,19225942-19226005,
19227341-19227480,19227571-19227694,19227781-19227840,
19227922-19227990,19228139-19228288,19229182-19229289,
19229573-19229648,19229960-19230054,19231729-19231803,
19231923-19232043,19232136-19232308,19232647-19232813,
19232944-19233301
Length = 752
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +1
Query: 49 KKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKEEGCSRYCGHR*QKTAVI 225
K C TL + ++N LK L +R+G K RR + C Q+T I
Sbjct: 467 KDCVAKTLKRL---EEKINGRVLKHLLYMMRVGEKSVQRRVALALAHLCAPEDQRTIFI 522
>03_05_0925 -
28864395-28864502,28865107-28865242,28865511-28865610,
28865704-28865814,28866054-28866147,28867112-28867272,
28867721-28867817
Length = 268
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 188 REQPSSLRLGVPLPPMRT 135
R +PSSLRLGV P RT
Sbjct: 24 RRRPSSLRLGVTSGPART 41
>11_06_0050 + 19631164-19631987,19632103-19634023
Length = 914
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 49 KKCPVLTLTQFTLKNSRM 102
K CP L LTQF+L +S M
Sbjct: 814 KGCPFLCLTQFSLASSSM 831
>08_01_0911 -
8976912-8977127,8977743-8977867,8977937-8978058,
8978283-8978422
Length = 200
Score = 25.8 bits (54), Expect = 8.7
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +1
Query: 136 VRIGGKGTPRRKEEGCSRYCGHR*QKTAVIAQKVVSEHNSWHRRG 270
V+ G G RRK RY R Q T I ++S H S H RG
Sbjct: 110 VQSTGVGDKRRK-----RYKAIRFQATTAIYTSLLSAHGSSHSRG 149
>05_07_0294 -
29038259-29038420,29038526-29038632,29038889-29039093,
29039173-29039536,29039588-29039772,29039879-29040080,
29040697-29041589
Length = 705
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +1
Query: 130 SQVRIGGKGTPRRKEEGCSRYCGHR*QKTAVIA-----QKVVSEHNSWHRRGKYDQRGRY 294
S +R GG TP R S Y G + A Q+V N W+++G Y + R+
Sbjct: 181 SIMRGGGGMTPPRSSIDASPYHGSYSRSPAPQGSSGGLQEVTRAGNEWYKKGHYGEALRH 240
Query: 295 CD 300
D
Sbjct: 241 YD 242
>05_06_0112 + 25654143-25655060
Length = 305
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 160 PRRKEEGCSRYCGHR*QKTAVIAQKVVSEHNSWHRR 267
PR E CS HR ++ +Q + +H WH R
Sbjct: 151 PREVEFSCSSTPLHRRRRAQRRSQLRLQQHGQWHDR 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,266,180
Number of Sequences: 37544
Number of extensions: 147500
Number of successful extensions: 348
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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