Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1192
         (337 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)                   60   6e-10
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)                     28   1.6  
SB_2939| Best HMM Match : Ku (HMM E-Value=2.8e-07)                     28   1.6  
SB_16014| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_43207| Best HMM Match : MCPsignal (HMM E-Value=1.5e-33)             27   3.8  
SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               27   5.0  

>SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)
          Length = 98

 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = +2

Query: 242 VNTIPGIEEVNMIKEDGTVIHFNNPKAQ 325
           VN IPGIEEVNMIKEDGTVIHFNNPKA+
Sbjct: 54  VNPIPGIEEVNMIKEDGTVIHFNNPKAE 81


>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1488

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 169 CVSVCP-YRRCVLATGVSLIFRCSFCC 92
           C S+C  Y RCV+   V++   CS  C
Sbjct: 639 CTSICHRYGRCVMLANVTMFCNCSRAC 665


>SB_2939| Best HMM Match : Ku (HMM E-Value=2.8e-07)
          Length = 512

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 148 GKGTPRRKEEGCSRYCGHR*QKTAVIAQKVVSEH-NSWHRRGKYDQRGRYCDTL 306
           G+GT   + +G SR  GHR QKT   AQ+V  E   SW +     Q     D++
Sbjct: 20  GEGTSDGRRDGNSRQDGHRKQKT---AQQVREEKLASWKKLSAIAQASPNSDSM 70


>SB_16014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 46  IKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPR 165
           I   P+L  T+F+ +N+++  EK    Q+ V  G +  P+
Sbjct: 73  IDNLPILLFTRFSCRNTQVREEKNLTSQNCVESGNEKIPK 112


>SB_43207| Best HMM Match : MCPsignal (HMM E-Value=1.5e-33)
          Length = 321

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 66  NVNTIYA*KQQNEQRKIKETPVASTHRR*GHTETQGRRLFTLL 194
           N+  I   +QQ EQ +    P ++  RR  H E    RLF+LL
Sbjct: 204 NLQRISEGRQQGEQLQQLGAPASAMMRRLPHYEPAMHRLFSLL 246


>SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1174

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +3

Query: 51   KVPRFNVNTIYA*KQQNEQRKIKETPVASTHRR*GHTETQGRRLFTLLRPQMTKNCSHRS 230
            +VP +  N     +++ EQRK++E+      ++    ET+ R L T LR +  +  + R 
Sbjct: 940  EVPSYRRNRFQDAEKEREQRKVRESERLEKEKQ--ERETKERELLT-LRAKQERETNERE 996

Query: 231  KSCQ 242
            +  Q
Sbjct: 997  ERRQ 1000


>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 441

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 37  NSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRI 144
           N V+ +  +L L  + LKN + NSE LKKL    RI
Sbjct: 96  NEVVSREILLQLIGYLLKNYQENSE-LKKLVDSTRI 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,954,317
Number of Sequences: 59808
Number of extensions: 179443
Number of successful extensions: 427
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)