SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1192
         (337 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070378-1|AAH70378.1|  158|Homo sapiens basic transcription fac...    75   7e-14
BC022371-1|AAH22371.1|  158|Homo sapiens BTF3L4 protein protein.       75   7e-14
BC021004-1|AAH21004.1|  153|Homo sapiens BTF3L4 protein protein.       75   7e-14
AL445685-6|CAI17032.1|  158|Homo sapiens basic transcription fac...    75   7e-14
AL139156-5|CAI22856.1|  158|Homo sapiens basic transcription fac...    75   7e-14
AK027750-1|BAB55342.1|  158|Homo sapiens protein ( Homo sapiens ...    75   7e-14
X74070-1|CAA52200.1|  162|Homo sapiens transcription factor BTF3...    69   5e-12
X53281-1|CAA37376.1|  162|Homo sapiens general transcription fac...    69   5e-12
X53280-1|CAA37375.1|  206|Homo sapiens general transcription fac...    69   5e-12
BT007120-1|AAP35784.1|  162|Homo sapiens basic transcription fac...    69   5e-12
BC008062-1|AAH08062.1|  162|Homo sapiens basic transcription fac...    69   5e-12
AB062126-1|BAB93458.1|  162|Homo sapiens transcription factor BT...    69   5e-12
M90356-1|AAA58401.1|  214|Homo sapiens BTF3 homologue protein.         66   3e-11
M90354-1|AAA58400.1|  111|Homo sapiens BTF3 homologue protein.         66   3e-11
M90357-1|AAA58398.1|  158|Homo sapiens basic transcription facto...    42   6e-04
M90355-1|AAB04035.1|   67|Homo sapiens BTF3 homologue protein.         32   0.50 
AB023201-1|BAA76828.1|  728|Homo sapiens KIAA0984 protein protein.     30   2.0  
BC062736-1|AAH62736.1|  102|Homo sapiens LOC503543 protein protein.    29   2.7  

>BC070378-1|AAH70378.1|  158|Homo sapiens basic transcription factor
           3-like 4 protein.
          Length = 158

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 36/56 (64%), Positives = 39/56 (69%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           +KKVVH TA  DD           VN I GIEEVNMIK+DGTVIHFNNPK QASL+
Sbjct: 24  KKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLS 79



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = +1

Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
           MN EKL KLQ+QVRIGGKGT RRK++
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKK 26


>BC022371-1|AAH22371.1|  158|Homo sapiens BTF3L4 protein protein.
          Length = 158

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 36/56 (64%), Positives = 39/56 (69%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           +KKVVH TA  DD           VN I GIEEVNMIK+DGTVIHFNNPK QASL+
Sbjct: 24  KKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLS 79



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = +1

Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
           MN EKL KLQ+QVRIGGKGT RRK++
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKK 26


>BC021004-1|AAH21004.1|  153|Homo sapiens BTF3L4 protein protein.
          Length = 153

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 36/56 (64%), Positives = 39/56 (69%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           +KKVVH TA  DD           VN I GIEEVNMIK+DGTVIHFNNPK QASL+
Sbjct: 19  KKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLS 74


>AL445685-6|CAI17032.1|  158|Homo sapiens basic transcription factor
           3-like 4 protein.
          Length = 158

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 36/56 (64%), Positives = 39/56 (69%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           +KKVVH TA  DD           VN I GIEEVNMIK+DGTVIHFNNPK QASL+
Sbjct: 24  KKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLS 79



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = +1

Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
           MN EKL KLQ+QVRIGGKGT RRK++
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKK 26


>AL139156-5|CAI22856.1|  158|Homo sapiens basic transcription factor
           3-like 4 protein.
          Length = 158

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 36/56 (64%), Positives = 39/56 (69%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           +KKVVH TA  DD           VN I GIEEVNMIK+DGTVIHFNNPK QASL+
Sbjct: 24  KKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLS 79



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = +1

Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
           MN EKL KLQ+QVRIGGKGT RRK++
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKK 26


>AK027750-1|BAB55342.1|  158|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14844 fis, clone PLACE1000133, highly similar to
           TRANSCRIPTION FACTOR BTF3. ).
          Length = 158

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 36/56 (64%), Positives = 39/56 (69%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           +KKVVH TA  DD           VN I GIEEVNMIK+DGTVIHFNNPK QASL+
Sbjct: 24  KKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLS 79



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = +1

Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
           MN EKL KLQ+QVRIGGKGT RRK++
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKK 26


>X74070-1|CAA52200.1|  162|Homo sapiens transcription factor BTF3
           protein.
          Length = 162

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 34/56 (60%), Positives = 35/56 (62%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           +KKVVH TA  DD           VN I GIEEVNM    GTVIHFNNPK QASLA
Sbjct: 29  KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLA 84



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +1

Query: 85  LKNSRMNSEKLKKLQSQVRIGGKGTPRRKEE 177
           +K + MN EKL KLQ+QVRIGGKGT RRK++
Sbjct: 1   MKETIMNQEKLAKLQAQVRIGGKGTARRKKK 31


>X53281-1|CAA37376.1|  162|Homo sapiens general transcription factor
           protein.
          Length = 162

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 34/56 (60%), Positives = 35/56 (62%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           +KKVVH TA  DD           VN I GIEEVNM    GTVIHFNNPK QASLA
Sbjct: 29  KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLA 84



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +1

Query: 85  LKNSRMNSEKLKKLQSQVRIGGKGTPRRKEE 177
           +K + MN EKL KLQ+QVRIGGKGT RRK++
Sbjct: 1   MKETIMNQEKLAKLQAQVRIGGKGTARRKKK 31


>X53280-1|CAA37375.1|  206|Homo sapiens general transcription factor
            protein.
          Length = 206

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 34/56 (60%), Positives = 35/56 (62%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           +KKVVH TA  DD           VN I GIEEVNM    GTVIHFNNPK QASLA
Sbjct: 73  KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLA 128



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +1

Query: 85  LKNSRMNSEKLKKLQSQVRIGGKGTPRRKEE 177
           +K + MN EKL KLQ+QVRIGGKGT RRK++
Sbjct: 45  MKETIMNQEKLAKLQAQVRIGGKGTARRKKK 75


>BT007120-1|AAP35784.1|  162|Homo sapiens basic transcription factor
           3 protein.
          Length = 162

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 34/56 (60%), Positives = 35/56 (62%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           +KKVVH TA  DD           VN I GIEEVNM    GTVIHFNNPK QASLA
Sbjct: 29  KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLA 84



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +1

Query: 85  LKNSRMNSEKLKKLQSQVRIGGKGTPRRKEE 177
           +K + MN EKL KLQ+QVRIGGKGT RRK++
Sbjct: 1   MKETIMNQEKLAKLQAQVRIGGKGTARRKKK 31


>BC008062-1|AAH08062.1|  162|Homo sapiens basic transcription factor
           3 protein.
          Length = 162

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 34/56 (60%), Positives = 35/56 (62%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           +KKVVH TA  DD           VN I GIEEVNM    GTVIHFNNPK QASLA
Sbjct: 29  KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLA 84



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +1

Query: 85  LKNSRMNSEKLKKLQSQVRIGGKGTPRRKEE 177
           +K + MN EKL KLQ+QVRIGGKGT RRK++
Sbjct: 1   MKETIMNQEKLAKLQAQVRIGGKGTARRKKK 31


>AB062126-1|BAB93458.1|  162|Homo sapiens transcription factor BTF 3
           protein.
          Length = 162

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 34/56 (60%), Positives = 35/56 (62%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           +KKVVH TA  DD           VN I GIEEVNM    GTVIHFNNPK QASLA
Sbjct: 29  KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLA 84



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +1

Query: 85  LKNSRMNSEKLKKLQSQVRIGGKGTPRRKEE 177
           +K + MN EKL KLQ+QVRIGGKGT RRK++
Sbjct: 1   MKETIMNQEKLAKLQAQVRIGGKGTARRKKK 31


>M90356-1|AAA58401.1|  214|Homo sapiens BTF3 homologue protein.
          Length = 214

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 35/61 (57%), Positives = 37/61 (60%)
 Frame = +2

Query: 155 AHRDARKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASL 334
           AHR  +KKV H TA  DD           VN I GIE+VNM    GTVIHFNNPK QASL
Sbjct: 56  AHR--KKKVFHRTATADDKKLQFSLKKLQVNNISGIEKVNMFTNQGTVIHFNNPKFQASL 113

Query: 335 A 337
           A
Sbjct: 114 A 114



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +1

Query: 82  TLKNSRMNSEKLKKLQSQVRIGGKGTPRRKEE 177
           T +++     KL KLQ+QVRIGGKGT  RK++
Sbjct: 30  TCRSTDHEPGKLAKLQAQVRIGGKGTAHRKKK 61


>M90354-1|AAA58400.1|  111|Homo sapiens BTF3 homologue protein.
          Length = 111

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 34/56 (60%), Positives = 36/56 (64%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
           RKKVVH TA  +D           VN IPGIEEVNM    GTVIHFNNP+ QASLA
Sbjct: 27  RKKVVHTTA--EDKKFQFSLKKLGVNNIPGIEEVNMFTHQGTVIHFNNPEVQASLA 80


>M90357-1|AAA58398.1|  158|Homo sapiens basic transcription factor
           3a protein.
          Length = 158

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/24 (75%), Positives = 19/24 (79%)
 Frame = +2

Query: 266 EVNMIKEDGTVIHFNNPKAQASLA 337
           +VNM    GTVIHFNNPK QASLA
Sbjct: 67  KVNMFTNQGTVIHFNNPKVQASLA 90



 Score = 35.9 bits (79), Expect = 0.031
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +1

Query: 85  LKNSRMNSEKLKKLQSQVRIGGK 153
           +K + MN EKL KLQ+QVRIGGK
Sbjct: 45  MKETIMNQEKLAKLQAQVRIGGK 67


>M90355-1|AAB04035.1|   67|Homo sapiens BTF3 homologue protein.
          Length = 67

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVI 301
           RKKVVH TA  +D           ++   GIEEVNM     TVI
Sbjct: 26  RKKVVHRTATANDKKRQFSLKKLEIS---GIEEVNMFTNQATVI 66



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 85  LKNSRMNSEKLKKLQSQVRIGGKGTPRRKE 174
           +K + MN EKL KLQ++V IG  GT  RK+
Sbjct: 1   MKETIMNQEKLAKLQAKVPIG--GTAHRKK 28


>AB023201-1|BAA76828.1|  728|Homo sapiens KIAA0984 protein protein.
          Length = 728

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 178 GCSRYCGHR*QKTAVIAQKVVSEHNSWHRRGKYDQ 282
           GCS YCG   ++  V+ ++V+  +  W++   Y Q
Sbjct: 109 GCSSYCGQEAEQDRVVLKRVLLAYARWNKTVGYCQ 143


>BC062736-1|AAH62736.1|  102|Homo sapiens LOC503543 protein protein.
          Length = 102

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 269 VNMIKEDGTVIHFNNPKAQASLA 337
           +N  K   T+IHFNNP+ QA LA
Sbjct: 1   MNQEKLQRTMIHFNNPEVQAFLA 23


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,029,937
Number of Sequences: 237096
Number of extensions: 802472
Number of successful extensions: 5154
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5153
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -