Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1192
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    74   3e-14
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U42839-9|AAC69013.3|  355|Caenorhabditis elegans Ligand-gated io...    27   4.4  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 34/55 (61%), Positives = 38/55 (69%)
 Frame = +2

Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASL 334
           +KKV+H TAA DD           V  IPGIEEVNMIK+DGTVIHFNNPK Q S+
Sbjct: 31  KKKVIHKTAAADDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKVQTSV 85



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 19/32 (59%), Positives = 27/32 (84%), Gaps = 3/32 (9%)
 Frame = +1

Query: 91  NSRMNSEKLKKLQSQ---VRIGGKGTPRRKEE 177
           +S+  +E++KKLQ+Q   VRIGGKGTPRRK++
Sbjct: 2   DSKAIAERIKKLQAQQEHVRIGGKGTPRRKKK 33


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 217 AVIAQKVVSEHNSWHRRGKYDQRGR 291
           ++I+  V + H++WH  G  D RGR
Sbjct: 34  SIISGDVNAHHSAWHSEGSEDTRGR 58


>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 34  LNSVIKKCPVLTLTQFTLKNSRMNSEKLK 120
           L SVI K     +T ++ K+SR+NS KL+
Sbjct: 37  LISVIDKQQCRQITDYSAKDSRINSRKLR 65


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 34  LNSVIKKCPVLTLTQFTLKNSRMNSEKLK 120
           L SVI K     +T ++ K+SR+NS KL+
Sbjct: 37  LISVIDKQQCRQITDYSAKDSRINSRKLR 65


>U42839-9|AAC69013.3|  355|Caenorhabditis elegans Ligand-gated ion
           channel protein 3 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 187 VNNLLPCVSVCPYRRCVLATGVSLIF--RCSF 98
           + ++LP +S+C  ++ +L TG  L F  +CSF
Sbjct: 14  LQHILPDLSLCSSQKLILITGPVLFFNMQCSF 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,276,510
Number of Sequences: 27780
Number of extensions: 134046
Number of successful extensions: 300
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)