Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1192
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   0.99 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    20   7.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    20   9.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 0.99
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 59  GHFFMTLFSYYKTRQSRV 6
           G+F  +L +YYK R S+V
Sbjct: 580 GNFIESLGNYYKIRDSKV 597


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/28 (21%), Positives = 13/28 (46%)
 Frame = -2

Query: 300 ITVPSSLIIFTSSMPGIVFTDNFLSDDC 217
           IT+P   ++    +  +   + +  DDC
Sbjct: 95  ITMPPEEVVIGKEIVAVCRNEEYTGDDC 122


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 174 FLASRCALT 148
           +LAS+CALT
Sbjct: 161 YLASKCALT 169


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -1

Query: 157 CPYRRCV 137
           CPY RC+
Sbjct: 4   CPYARCI 10


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,329
Number of Sequences: 438
Number of extensions: 1303
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)