Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1192
(337 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73230.1 68414.m08475 nascent polypeptide-associated complex ... 56 4e-09
At1g17880.1 68414.m02212 nascent polypeptide-associated complex ... 56 8e-09
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-... 31 0.14
At1g32230.2 68414.m03965 WWE domain-containing protein / ceo pro... 29 1.0
At1g32230.1 68414.m03964 WWE domain-containing protein / ceo pro... 29 1.0
At3g60000.1 68416.m06699 hypothetical protein contains Pfam pro... 26 5.4
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 26 5.4
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 26 5.4
At5g15150.1 68418.m01775 homeobox-leucine zipper protein 7 (HAT7... 26 7.2
At3g59080.1 68416.m06586 aspartyl protease family protein contai... 25 9.5
At3g04980.1 68416.m00541 DNAJ heat shock N-terminal domain-conta... 25 9.5
>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
(NAC) domain-containing protein similar to SP|P20290
Transcription factor BTF3 (RNA polymerase B
transcription factor 3) {Homo sapiens}; contains Pfam
profile PF01849: NAC domain
Length = 165
Score = 56.4 bits (130), Expect = 4e-09
Identities = 29/56 (51%), Positives = 34/56 (60%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
+KK VH T TDD VN+IP IEEVN+ K+D VI F NPK QAS+A
Sbjct: 24 KKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIFKDD-VVIQFINPKVQASIA 78
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
MN EKL K+ + VR GGKGT RRK++
Sbjct: 1 MNREKLMKMANTVRTGGKGTVRRKKK 26
>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
(NAC) domain-containing protein / BTF3b-like
transcription factor, putative similar to SP|P20290
Transcription factor BTF3 (RNA polymerase B
transcription factor 3) {Homo sapiens}; contains Pfam
profile PF01849: NAC domain; identical to cDNA
BTF3b-like factor GI:5912423
Length = 165
Score = 55.6 bits (128), Expect = 8e-09
Identities = 29/56 (51%), Positives = 34/56 (60%)
Frame = +2
Query: 170 RKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLA 337
+KK VH T TDD VN+IP IEEVN+ K+D VI F NPK QAS+A
Sbjct: 24 KKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIFKDD-VVIQFINPKVQASIA 78
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 100 MNSEKLKKLQSQVRIGGKGTPRRKEE 177
MN EKL K+ + VR GGKGT RRK++
Sbjct: 1 MNREKLMKMANTVRTGGKGTVRRKKK 26
>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
/ HD-ZIP transcription factor 13 identical to homeobox
gene 13 protein (GP:12325190) [Arabidopsis thaliana]
Length = 294
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +1
Query: 73 TQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKEEGCSRYCGHR*QKTAVIAQKVVSEHN 252
+Q K R+N E++K L+ +G K P RK + +R G + ++ A+ Q +
Sbjct: 80 SQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQ-LARALGLQPRQIAIWFQNRRARWK 138
Query: 253 SWHRRGKYDQRGRYCDTL 306
+ YD R DTL
Sbjct: 139 TKQLEKDYDTLKRQFDTL 156
>At1g32230.2 68414.m03965 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 588
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 85 LKNSRMNSEKLKKLQSQVRIGGKGTPRRKEEGCSRYCGHR*QKTAVIAQKVVSEH 249
+++ + N+ KL+ ++ + G TPR E CS G +AQ+ +EH
Sbjct: 180 VEDPKQNAPHDIKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEH 234
>At1g32230.1 68414.m03964 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 589
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 85 LKNSRMNSEKLKKLQSQVRIGGKGTPRRKEEGCSRYCGHR*QKTAVIAQKVVSEH 249
+++ + N+ KL+ ++ + G TPR E CS G +AQ+ +EH
Sbjct: 180 VEDPKQNAPHDIKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEH 234
>At3g60000.1 68416.m06699 hypothetical protein contains Pfam
profile: PF04484 family of unknown function (DUF566)
Length = 451
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 188 REQPSSLRLGVPLPPM 141
RE S RLG+PLPPM
Sbjct: 216 RESSSFSRLGLPLPPM 231
>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 174 RRLFTLLRPQMTKNCS--HRSKSC 239
RRL T+L+P+M K C H S +C
Sbjct: 951 RRLHTVLKPKMAKLCQVLHLSDAC 974
>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 174 RRLFTLLRPQMTKNCS--HRSKSC 239
RRL T+L+P+M K C H S +C
Sbjct: 951 RRLHTVLKPKMAKLCQVLHLSDAC 974
>At5g15150.1 68418.m01775 homeobox-leucine zipper protein 7 (HAT7) /
HD-ZIP protein 7 / HD-ZIP protein (HB-3) identical to
homeobox-leucine zipper protein HAT7 (HD-ZIP protein 7)
(HD-ZIP protein ATHB-3) (SP:Q00466) [Arabidopsis
thaliana]
Length = 314
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 88 KNSRMNSEKLKKLQSQVRIGGKGTPRRK 171
K R+N E+++ L+ +G K P RK
Sbjct: 115 KKKRLNLEQVRALEKSFELGNKLEPERK 142
>At3g59080.1 68416.m06586 aspartyl protease family protein contains
similarity to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) [Nicotiana tabacum]; contains Pfam
profile PF00026: Eukaryotic aspartyl protease
Length = 535
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 45 HKKV-PRFNVNTIYA*KQQNEQRKIKETPVAST 140
HK+V + N NT+ +++N++ + TPVAS+
Sbjct: 115 HKRVLEKNNQNTVSQKQKKNDKEVVTTTPVASS 147
>At3g04980.1 68416.m00541 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 1165
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 88 KNSRMNSEKLKKLQSQVRIGGKGTPRRKEEGCS 186
KN ++ + KK Q + + G +KEEGC+
Sbjct: 228 KNGKVGGKVNKKNQEKQKNGAVNRGTKKEEGCT 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,661,158
Number of Sequences: 28952
Number of extensions: 117354
Number of successful extensions: 274
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -