Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1182
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    25   5.2  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   5.2  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   5.2  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    25   5.2  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    25   5.2  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   6.9  
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    25   6.9  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   6.9  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   9.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.1  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.1  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   9.1  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    25   9.1  

>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 375 KNL*KKCLTPNTAISQVPSI-LPNTSPNID 289
           K+L K   TP+T +  +PS+ L N  P++D
Sbjct: 168 KDLEKPGFTPSTGVDVLPSVPLKNAIPSLD 197


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 351 TP-NTAISQVPSILPNTSPNIDPN*KAKGTRLTTIVFQCFISVA 223
           TP +T+   +P++LP T P ++P+ +     +T  +   FI VA
Sbjct: 642 TPTSTSHIPIPTVLPPTQPVLEPSYREIVAFITFFLLFAFIFVA 685


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 382 VTKKSIKKMFNTEHSYIASSKYFAKYLPKYRP*LKSKGNQINNYC 248
           VT+ S +K  NTE +   SS Y A+   K    L  +  Q++++C
Sbjct: 24  VTRLSTEKSPNTEITQALSSSYEAEEKAKQLKELDFRLQQLSSFC 68


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 300 PNIDPN*KAKGTRLTTIVFQCFISVAHTSQA 208
           P I  N KAK T   +I+F    SV +TS A
Sbjct: 195 PQIIKNHKAKSTEGLSIIFFVLASVGNTSYA 225


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 421 RQFLSNHNMGFSKVTKKSIKKMFNTEHSYIASSKYFAKYL--PKYRP*LKSKGNQI 260
           +Q + NHN+   +  + + K+M   E + +  +K FA+ L  P Y+  + S   QI
Sbjct: 223 KQTIFNHNLLDYRRLQANEKRMSKEERNLLNKTKAFARLLTGPDYQKFVNSYHEQI 278


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 376 KKSIKKMFNTEHSYIASSKYFAKYLPKYRP*LKSK 272
           KK++K   N EH YI   +     L KY   LK++
Sbjct: 506 KKTLKLAENKEHDYIGKLQEREHALTKYESSLKAE 540


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 403 HNMGFSKVTKKSIKKMFNTEHSYIASSKYFA 311
           H+MGFS      +  +  +EH  + +  YFA
Sbjct: 81  HSMGFSNEPADKLANLLVSEHPDVFARAYFA 111


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 351 TPNTAISQVPSILPN 307
           TPN ++S +PSILP+
Sbjct: 311 TPNESLSSLPSILPS 325


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 381 LPKNL*KKCLTPNTAISQVPSILPN 307
           LP +L K  L  NTA  +  S+LPN
Sbjct: 232 LPPHLEKCILNSNTAYKEDQSVLPN 256


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 342  TAISQVPSILPNTSPNIDPN*KAKGTRLTTIVFQCFISVAHTSQA 208
            TA    PSI PN +PN+  +   +G  L +       S  H   A
Sbjct: 1000 TAKQYAPSIPPNFNPNVSIDTMTEGVALPSATLDSDKSSLHKRSA 1044


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 426 YNGSSSQIITWDFQKLPKNL*KKCLTPNTAISQVPSILPNTSPNID 289
           Y  S+S+ IT+D            L  N +IS VPS+   +  N+D
Sbjct: 138 YPNSNSETITYDIDDNVNP--SSSLVDNFSISSVPSVFFQSDFNLD 181


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 212 RLKCITRQEKHNK*GASSPCVLWL 141
           R++ + RQ+ H++   S  CV W+
Sbjct: 45  RVEALDRQQSHSRITISKQCVSWI 68


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 301 GGIWQNTWNLRYSCVRC 351
           GG W   WN   +CV C
Sbjct: 327 GGFWGGLWNPNGNCVVC 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,433
Number of Sequences: 5004
Number of extensions: 51937
Number of successful extensions: 129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)