Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1182
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0653 + 19606476-19606752,19607210-19608436,19614698-19614942 30 1.3
11_06_0470 + 23977394-23977503,23977755-23977922,23978724-239793... 29 1.7
03_06_0357 - 33359403-33359579,33361111-33361245,33362304-33362492 29 2.3
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 28 4.0
08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461 28 5.3
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 27 7.0
08_02_1448 - 27168389-27172021 27 9.2
04_03_0801 - 19828175-19828770,19828913-19828994 27 9.2
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192... 27 9.2
>10_08_0653 + 19606476-19606752,19607210-19608436,19614698-19614942
Length = 582
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 149 LWLKLSLDHFEMYMLIWDYFLNVLFAQM-GNSVQQSHRYVRVRE 21
+WL + +F+MY + ++ ++ + M GN+ Q H Y V E
Sbjct: 235 IWLNMCETYFDMYQITQNFKVSAVVLHMSGNAAQWYHSYKLVNE 278
>11_06_0470 +
23977394-23977503,23977755-23977922,23978724-23979367,
23979584-23979823,23980175-23980296,23980397-23981080
Length = 655
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 15 YLFSHSYIAVALLNTVPHLRK*NIQ 89
+LFSH I A+ +T+ HLRK N++
Sbjct: 128 HLFSHKSIDAAVKDTIRHLRKNNVE 152
>03_06_0357 - 33359403-33359579,33361111-33361245,33362304-33362492
Length = 166
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 170 GASSPCVLWLKLSLDHFEMYMLIWDYFLNVLFAQMGN 60
G +S + + L L HF + ML+W YF +V+F G+
Sbjct: 46 GGASTLLALVVLLLFHFLLVMLLWSYF-SVVFTDPGS 81
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = -1
Query: 231 SVAHTSQA*MYYETRETQ*IGCKQSVCAVVKIVVGSFRDVYAHLGLFFECFICADGEQCS 52
SVA +S A E+R+ G S A+ IVVG+ ++A L L C+ G +
Sbjct: 341 SVASSSPALATPESRDGPGKG-GLSTGAIAGIVVGNALFLFAMLSLLVASCCCSTGGESG 399
Query: 51 TEPP 40
EPP
Sbjct: 400 GEPP 403
>08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461
Length = 874
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 223 THITGLNVL--RDKRNTINRVQAVRVCCG*NCRWIISRCICSFGTIF*MFYL 74
+H L+V + K ++ + +RV C+W+ S CI + G +F + YL
Sbjct: 504 SHARSLDVFCYQPKLPSLLEFRHLRVLSFRYCKWLKSHCIANIGRLFQLRYL 555
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 27.5 bits (58), Expect = 7.0
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = -3
Query: 433 NSI*RQFLSNHNMGFSKVTKKSIKKMFNTEHSYIASSKYFAKYLPKYRP*LKSKGNQINN 254
NS+ ++ +HN+G K++ ++ S KYF+K L P K+ I N
Sbjct: 121 NSLKKKLNIHHNIGDQNFKDKNVDTDLKSDAFSRFSVKYFSKVLDSLSPHHKT---VIEN 177
Query: 253 YCFSMFYL 230
CF L
Sbjct: 178 SCFQSMLL 185
>08_02_1448 - 27168389-27172021
Length = 1210
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 209 LKCITRQEKHNK*GASSPCVLWLKLSLDHFEM 114
L+C+T N G LWL +SL+H ++
Sbjct: 800 LQCLTTLRISNCLGCKDLSTLWLSVSLEHLQL 831
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 87 ECFICADGEQCSTEPPLCK 31
E FI + E C+ +PP CK
Sbjct: 107 EAFIMVEREHCNKQPPACK 125
>01_07_0198 -
41918276-41918408,41918486-41918841,41919091-41919237,
41919666-41921789,41922150-41922344,41922488-41922568,
41923325-41923414,41923507-41923593,41923914-41923961
Length = 1086
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = -3
Query: 394 GFSKVTKKSIKKMFNTEHSYIASSKYFAKYLPKYRP*LKSKGNQINNYCFSMFYLCRTHI 215
GFS+ ++ ++ NT+ S ++S + F +Y K+K + N+ S +H
Sbjct: 735 GFSETNEEELETRSNTQLSRLSSMESFKNMDSRYSK--KNKKFEFNSTRVSPVPNGSSHW 792
Query: 214 TGLNVLR 194
+GLN+ R
Sbjct: 793 SGLNISR 799
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,216,455
Number of Sequences: 37544
Number of extensions: 287853
Number of successful extensions: 643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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