Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1182
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44725| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_32368| Best HMM Match : ORC2 (HMM E-Value=0.0015)                   29   2.3  
SB_9377| Best HMM Match : DUF1550 (HMM E-Value=4)                      29   2.3  
SB_38703| Best HMM Match : MMR_HSR1 (HMM E-Value=0.92)                 28   5.4  

>SB_44725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 332 RKFQVFCQIPPQISTLTKKQREPD*QLLFFNVLSLSHTHHRLKCIT 195
           RK  V  +    IST++K++R    QLL FN   L    H+L  IT
Sbjct: 6   RKIVVVFRAVRWISTVSKRERRASLQLLIFNEEFLVSASHQLALIT 51


>SB_32368| Best HMM Match : ORC2 (HMM E-Value=0.0015)
          Length = 174

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 161 SPCVLWLKLSLDHFEMYMLIWDYFLNVLFAQMGNSVQQSHRYV 33
           +P    + + +DHF +  L+WD  +   F  + N V     YV
Sbjct: 74  TPAAAVISIKVDHFALCALVWDQSMCSRFKWLWNDVSTFEPYV 116


>SB_9377| Best HMM Match : DUF1550 (HMM E-Value=4)
          Length = 91

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 296 ISTLTKKQREPD*QLLFFNVLSLSHTHHRLKCIT 195
           IST++K++R    QLL FN   L    H+L  IT
Sbjct: 18  ISTVSKRERRASLQLLIFNEEFLVSASHQLALIT 51


>SB_38703| Best HMM Match : MMR_HSR1 (HMM E-Value=0.92)
          Length = 458

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = -1

Query: 522 IIDP*VSSDYPISYIVNDATNRETRVQNSIIVYNGSSSQIITWDFQKLPKNL*KKCL 352
           ++DP   + Y +SYI          ++ +       +  I    +Q+ PK L K CL
Sbjct: 6   VLDPYACATYILSYITKGQRGMSKLLEKATEEVKSGNRDIANKHYQRRPKKLEKLCL 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,421,136
Number of Sequences: 59808
Number of extensions: 376024
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)