Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1182
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical pr...    30   0.88 
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    28   3.6  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    28   3.6  
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z92834-10|CAB07393.1|  439|Caenorhabditis elegans Hypothetical p...    27   8.2  
AL117204-16|CAB55130.1|  389|Caenorhabditis elegans Hypothetical...    27   8.2  

>Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical
           protein T01B4.1 protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 144 PQHTRTACTLFIVFLLSRNTFKPVMCVRQR*NIEKQ 251
           P H RTAC LF+++ +    F  V  + Q   +E Q
Sbjct: 282 PDHPRTACALFVLYFIGLALFAMVYAILQE-RVENQ 316


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 387  ENPML*FERNCRYILLLNFELVSHDWWRHSRCMK 488
            ENPM+    N    +++ FE+   D W++  C++
Sbjct: 2124 ENPMIAIVANTSDPVIVEFEIEEDDGWKYPECVR 2157


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 387  ENPML*FERNCRYILLLNFELVSHDWWRHSRCMK 488
            ENPM+    N    +++ FE+   D W++  C++
Sbjct: 2124 ENPMIAIVANTSDPVIVEFEIEEDDGWKYPECVR 2157


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 387  ENPML*FERNCRYILLLNFELVSHDWWRHSRCMK 488
            ENPM+    N    +++ FE+   D W++  C++
Sbjct: 2143 ENPMIAIVANTSDPVIVEFEIEEDDGWKYPECVR 2176


>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
           protein B0393.5 protein.
          Length = 1106

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/77 (24%), Positives = 29/77 (37%)
 Frame = -1

Query: 240 CFISVAHTSQA*MYYETRETQ*IGCKQSVCAVVKIVVGSFRDVYAHLGLFFECFICADGE 61
           C  S   T      Y+  E +  G      ++    +GSF +   H G  FE   C D +
Sbjct: 387 CTCSEGFTGDGFRCYDVDECEIPGAVCRDHSICSNTIGSF-ECTCHGGYRFEDGKCEDVD 445

Query: 60  QCSTEPPLCKSERRDMK 10
           +C   P +C    +  K
Sbjct: 446 ECRELPKICGDPNKGTK 462


>Z92834-10|CAB07393.1|  439|Caenorhabditis elegans Hypothetical
           protein F39B2.7 protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 522 IIDP*VSSDYPISYIVNDATNRETRVQNSIIVYNGSSSQIITWDFQKLPKN 370
           ++DP  +SD  +  I+ND      R    II  N S    ++  + KLP N
Sbjct: 297 VVDPQFTSDDDVESILNDVEVMRNREARVIIAKNKSD---LSLKYPKLPSN 344


>AL117204-16|CAB55130.1|  389|Caenorhabditis elegans Hypothetical
           protein Y116A8C.25 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 235 KTLKNNSC*SGSLCFLVRVDIWGGIWQNT 321
           KT K   C    L  LV  D+WGG W  T
Sbjct: 192 KTAKLLKCRENVLPSLVHGDLWGGNWSMT 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,723
Number of Sequences: 27780
Number of extensions: 293845
Number of successful extensions: 694
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)