Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1182
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    27   0.16 
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    27   0.16 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   0.63 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   5.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.7  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 245 KTIVVNLVPFAF*LGSIFGE 304
           KTI++ LVP  F LG +F E
Sbjct: 2   KTILIALVPVCFLLGEVFSE 21


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 245 KTIVVNLVPFAF*LGSIFGE 304
           KTI++ LVP  F LG +F E
Sbjct: 2   KTILIALVPVCFLLGEVFSE 21


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -1

Query: 102 LGLFFECFICADGEQCSTEPPLCKSE 25
           L L   C IC+    C T P     E
Sbjct: 7   LSLLITCLICSPSVHCGTRPSFVSDE 32


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 370 SIKKMFNTEHSYIASSKYFAKYLPKY 293
           S+    N   +YI ++ Y +KY+ +Y
Sbjct: 189 SVVTGMNNIETYIVNTNYSSKYMREY 214


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 78  ICADGEQCSTEPPL-CKSER 22
           ICA+G QCS    + C +E+
Sbjct: 78  ICAEGMQCSCNKCIGCSAEK 97


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 142 NHSTHGLLAPYLLCFSC 192
           +H  HG L P  +C++C
Sbjct: 358 SHPLHGNLLPPGVCYTC 374


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 16/75 (21%), Positives = 34/75 (45%)
 Frame = -2

Query: 308 IPPQISTLTKKQREPD*QLLFFNVLSLSHTHHRLKCITRQEKHNK*GASSPCVLWLKLSL 129
           IP  + + +   R+P   +L+ N+LS    + +L     Q ++++     P V +  +++
Sbjct: 404 IPSALQSYSTSMRDPAFYMLYQNILSYFLRYKKL-----QPQYSQSELQMPGVKFESVNI 458

Query: 128 DHFEMYMLIWDYFLN 84
           D    Y    D  +N
Sbjct: 459 DKLYTYFDKCDTLIN 473


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 293 STLTKKQREPD*QLLFFNVLSLSH 222
           +TL +  R+P  ++L+F   +L+H
Sbjct: 428 ATLNRDFRKPFREILYFRCSNLNH 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,722
Number of Sequences: 438
Number of extensions: 3767
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)