Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1181
         (345 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.22 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   2.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    20   6.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   8.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   8.2  
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    20   8.2  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 0.22
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 256 DADNFRTLQLPRDVGHYVHSISTTDTNTQSTKATS 152
           D  +     LP+ +  YVH I  T       KATS
Sbjct: 477 DVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATS 511


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 235 LQLPRDVGHYVHSISTTDTN 176
           LQ PR VG Y     +TD N
Sbjct: 1   LQYPRSVGVYGAPYPSTDQN 20


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 345 PVPPFTVRMPATFKITSFGLVQPVSLPVNLT 253
           P PP+ +    T   +   + QPV+   NLT
Sbjct: 330 PPPPYQISAQPTPSQSPNQIYQPVTNLTNLT 360


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 72  PEPGFQKPTPYLAPAVSK 19
           P P  Q P P L+P +S+
Sbjct: 166 PFPAGQYPYPILSPEMSQ 183



 Score = 19.8 bits (39), Expect = 8.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 72  PEPGFQKPTPYLAPAVSKNLYTSF 1
           P  GF+ P P   P  + +L + F
Sbjct: 198 PGAGFRSPYPSALPISTSSLPSDF 221


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 72  PEPGFQKPTPYLAPAVSK 19
           P P  Q P P L+P +S+
Sbjct: 58  PFPAGQYPYPILSPEMSQ 75



 Score = 19.8 bits (39), Expect = 8.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 72  PEPGFQKPTPYLAPAVSKNLYTSF 1
           P  GF+ P P   P  + +L + F
Sbjct: 90  PGAGFRSPYPSALPISTSSLPSDF 113


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 141 WESVPIMSRPGNA*FSR 91
           WE V   ++PGN  + R
Sbjct: 25  WEGVLDATKPGNVCYQR 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,390
Number of Sequences: 336
Number of extensions: 1507
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6770240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)