BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1181 (345 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 194 4e-51 SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 162 2e-41 SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 56 2e-09 SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 41 6e-05 SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 27 0.62 SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 26 1.9 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 3.3 SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 24 7.6 SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 24 7.6 >SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr 1|||Manual Length = 778 Score = 194 bits (472), Expect = 4e-51 Identities = 89/114 (78%), Positives = 96/114 (84%) Frame = +2 Query: 2 KEVYKFLETAGAKYGVGFWKPGSGIIHQIILENYAFPGLLMIGTDSHTPNXXXXXXXXXX 181 KEVY FL+TA AKY +GFW+PGSGIIHQI+LENYAFPG L+IGTDSHTPN Sbjct: 144 KEVYDFLQTACAKYNIGFWRPGSGIIHQIVLENYAFPGGLLIGTDSHTPNAGGLGMVAIG 203 Query: 182 XXXADAVDVMANIPWELKCPKVIGVKLTGKLTGWTSPKDVILKVAGILTVKGGT 343 ADAVDVMAN+PWELKCPKVIGVKLTG+L GWTSPKDVILKVAGILTVKGGT Sbjct: 204 VGGADAVDVMANLPWELKCPKVIGVKLTGQLKGWTSPKDVILKVAGILTVKGGT 257 >SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr 2|||Manual Length = 905 Score = 162 bits (393), Expect = 2e-41 Identities = 71/114 (62%), Positives = 86/114 (75%) Frame = +2 Query: 2 KEVYKFLETAGAKYGVGFWKPGSGIIHQIILENYAFPGLLMIGTDSHTPNXXXXXXXXXX 181 KE++ FL++A KYG+ FW PGSGIIHQI+LENYA PG +M+GTDSHTPN Sbjct: 148 KEIFDFLQSAAKKYGIQFWGPGSGIIHQIVLENYAAPGGMMLGTDSHTPNAGGLGMIAIG 207 Query: 182 XXXADAVDVMANIPWELKCPKVIGVKLTGKLTGWTSPKDVILKVAGILTVKGGT 343 ADAVD M N PWELK PK+IGV LTG ++GWT+PKD+IL +AG LTV+GGT Sbjct: 208 VGGADAVDAMTNTPWELKAPKIIGVNLTGAMSGWTTPKDLILHLAGKLTVRGGT 261 >SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces pombe|chr 1|||Manual Length = 721 Score = 56.0 bits (129), Expect = 2e-09 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 1/104 (0%) Frame = +2 Query: 11 YKFLETAGAKYGVGFWKPGSGIIHQIILEN-YAFPGLLMIGTDSHTPNXXXXXXXXXXXX 187 YK +E+ G+ F+ G GI HQI++E YA PG + + +DSH+ Sbjct: 140 YKNIESFAKGQGIDFYPAGRGIGHQIMVEQGYAMPGSMAVASDSHSNTYGGVGCLGTPIV 199 Query: 188 XADAVDVMANIPWELKCPKVIGVKLTGKLTGWTSPKDVILKVAG 319 DA + A + P + V L G+L S KD+I+ + G Sbjct: 200 RTDAAAIWATGQTWWQIPPIARVNLVGQLPKGLSGKDIIVSLCG 243 >SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 758 Score = 40.7 bits (91), Expect = 6e-05 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Frame = +2 Query: 71 GIIHQIILEN-YAFPGLLMIGTDSHTPNXXXXXXXXXXXXXADAVDVMANIPWELKCPKV 247 GI+H I E + PG ++ DSHT ++ V+A + K Sbjct: 118 GIVHVIGPEQGFTLPGTTLVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTILQRKSKN 177 Query: 248 IGVKLTGKLTGWTSPKDVILKVAGILTVKGGT 343 + +++ GKL + KD+IL + G++ GGT Sbjct: 178 MRIRVNGKLPEGIASKDLILHIIGVIGTAGGT 209 >SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 404 Score = 27.5 bits (58), Expect = 0.62 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 256 DADNFRTLQLPRDVGHYVHSISTTDT 179 D+ N +LP D+ HY H IS DT Sbjct: 186 DSQNPSQYRLPDDLVHYFHGISRGDT 211 >SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 334 Score = 25.8 bits (54), Expect = 1.9 Identities = 9/26 (34%), Positives = 12/26 (46%) Frame = +1 Query: 52 FLEARLWYYPSDHSGELCVPWSTHDR 129 F +++ P D PW THDR Sbjct: 220 FAYFEVYWVPEDRIAPFAQPWHTHDR 245 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 25.0 bits (52), Expect = 3.3 Identities = 11/46 (23%), Positives = 21/46 (45%) Frame = -1 Query: 336 PFTVRMPATFKITSFGLVQPVSLPVNLTPITLGHFSSHGMLAITST 199 P+T + +T+ S+P TP+T +++ +TST Sbjct: 480 PYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTST 525 Score = 24.6 bits (51), Expect = 4.4 Identities = 15/49 (30%), Positives = 21/49 (42%) Frame = -1 Query: 339 PPFTVRMPATFKITSFGLVQPVSLPVNLTPITLGHFSSHGMLAITSTAS 193 PP T P+TF + S+P N T + SS + ST+S Sbjct: 692 PPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSS 740 >SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces pombe|chr 1|||Manual Length = 556 Score = 23.8 bits (49), Expect = 7.6 Identities = 8/30 (26%), Positives = 15/30 (50%) Frame = +1 Query: 40 IWSRFLEARLWYYPSDHSGELCVPWSTHDR 129 +W +F E L+ + + + + WS H R Sbjct: 400 VWDKFEEKPLYSFHNHIAAVKAITWSPHQR 429 >SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 533 Score = 23.8 bits (49), Expect = 7.6 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 261 NLTPITLGHFSSHGMLAITSTASA 190 NL+P+ HFS HGML I + +A Sbjct: 312 NLSPML--HFSFHGMLMIVTEWAA 333 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,397,783 Number of Sequences: 5004 Number of extensions: 24988 Number of successful extensions: 99 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 99 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 102111100 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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