Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1181
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200... 51 2e-07
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532... 50 4e-07
02_01_0193 - 1305109-1305249,1305677-1305835,1305922-1305969,130... 49 9e-07
12_02_0122 + 13923510-13925081 28 2.3
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 27 3.0
01_05_0394 + 21733751-21734584 27 3.0
11_06_0639 - 25730092-25730224,25730867-25731045 26 6.9
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 26 9.1
01_06_1205 + 35406456-35408072 26 9.1
>03_01_0261 -
2007522-2007590,2007684-2007926,2008008-2008106,
2008214-2008693,2008806-2008904,2009097-2009218,
2009296-2009414,2009492-2009559,2009832-2010017,
2010323-2010425,2010477-2010556,2010638-2010694,
2010771-2010913,2010988-2011132,2011501-2011662,
2011759-2011944,2012273-2012365,2012893-2013053,
2013440-2013547,2013664-2013928
Length = 995
Score = 51.2 bits (117), Expect = 2e-07
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Frame = +2
Query: 62 PGSGIIHQIILENYAFP-----GLL----MIGTDSHTPNXXXXXXXXXXXXXADAVDVMA 214
PGSGI+HQ+ LE A G+L ++GTDSHT +A M
Sbjct: 264 PGSGIVHQVNLEYLARVVFNNGGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATML 323
Query: 215 NIPWELKCPKVIGVKLTGKLTGWTSPKDVILKVAGILTVKG 337
P + P V+G KLTGKL + D++L V +L G
Sbjct: 324 GQPMSMVLPGVVGFKLTGKLRNGVTATDLVLTVTQMLRKHG 364
>08_01_0606 -
5321751-5321819,5321950-5322192,5322279-5322377,
5322463-5322942,5323069-5323167,5323306-5323427,
5323517-5323635,5323734-5323801,5323889-5324074,
5324169-5324244,5324339-5324418,5324505-5324561,
5324980-5325122,5325208-5325352,5325652-5325813,
5325893-5326078,5326263-5326355,5326437-5326597,
5327005-5327109,5328263-5328278
Length = 902
Score = 50.4 bits (115), Expect = 4e-07
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Frame = +2
Query: 62 PGSGIIHQIILEN-----YAFPGLL----MIGTDSHTPNXXXXXXXXXXXXXADAVDVMA 214
PGSGI+HQ+ LE + G++ ++GTDSHT +A M
Sbjct: 180 PGSGIVHQVNLEYLGRVVFNTDGIMYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATML 239
Query: 215 NIPWELKCPKVIGVKLTGKLTGWTSPKDVILKVAGILTVKG 337
P + P V+G KLTGKL + D++L V +L G
Sbjct: 240 GQPMSMVLPGVVGFKLTGKLQNGVTATDLVLTVTQMLRKHG 280
>02_01_0193 -
1305109-1305249,1305677-1305835,1305922-1305969,
1306621-1306752,1306842-1306896,1307600-1307649,
1307822-1307917,1308001-1308078,1308169-1308243,
1308648-1308764,1308843-1308911,1309035-1309358,
1309534-1309587,1309688-1309747
Length = 485
Score = 49.2 bits (112), Expect = 9e-07
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +2
Query: 71 GIIHQIIL-ENYAFPGLLMIGTDSHTPNXXXXXXXXXXXXXADAVDVMANIPWELKCPKV 247
G+ H + E + PG +++GTDSHT N DA VM LK P
Sbjct: 153 GVCHVALAQEGHCRPGEVLLGTDSHTCNAGAFGQFATGIGNTDAGFVMGTGKALLKVPPT 212
Query: 248 IGVKLTGKLTGWTSPKDVILKVAGILTVKGGT 343
I L G++ + KD+IL++ G ++V G T
Sbjct: 213 IRFVLDGEMPPYLLAKDLILQIIGEISVSGAT 244
>12_02_0122 + 13923510-13925081
Length = 523
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 4 RSIQVFRDCRS*IWSRFLEARLWYYPSDHSGELCV 108
RS+QV D + F A LW+YPS S + V
Sbjct: 97 RSVQVSVDDHQEVTDSFRGATLWWYPSSMSNKSSV 131
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 44 GVGFWKPGSGIIHQIILENYAFPGLL 121
G G W P S +I Q+I E Y P L+
Sbjct: 64 GDGKWIPDSDVITQVIEEKYPTPSLV 89
>01_05_0394 + 21733751-21734584
Length = 277
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 236 CPKVIGVKLTGKLTGWTSPKDVILKVAGILTVKG 337
C V+G+ TG TGW ++L AGI G
Sbjct: 230 CGAVVGLGFTGFGTGWGQKVAIVLGSAGIYAPLG 263
>11_06_0639 - 25730092-25730224,25730867-25731045
Length = 103
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 121 HDRHRLPHT*WRWPWW 168
HD + LP T WR WW
Sbjct: 47 HDSNPLPSTAWRPRWW 62
>02_05_0640 -
30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 300 TSFGLVQPVSLPVNLTPITLGHFSSHGMLAITS 202
T G+ QP+ N++PI FSS G L +T+
Sbjct: 207 TQSGIDQPIG--ANVSPIKGAEFSSPGQLGLTA 237
>01_06_1205 + 35406456-35408072
Length = 538
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 277 RLDESERCDLEGGRHP 324
R D SE C L+GG HP
Sbjct: 300 RRDPSESCPLDGGVHP 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,611,860
Number of Sequences: 37544
Number of extensions: 180881
Number of successful extensions: 467
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -