Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1181
         (345 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)              102   7e-23
SB_17736| Best HMM Match : Aconitase (HMM E-Value=5.2e-16)             35   0.020
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.58 
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_6812| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.8  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            28   2.3  
SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)                26   7.1  
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_1520| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-19)           26   7.1  
SB_51323| Best HMM Match : LicD (HMM E-Value=0.0088)                   26   9.4  
SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  

>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
          Length = 193

 Score =  102 bits (245), Expect = 7e-23
 Identities = 43/50 (86%), Positives = 47/50 (94%)
 Frame = +2

Query: 2   KEVYKFLETAGAKYGVGFWKPGSGIIHQIILENYAFPGLLMIGTDSHTPN 151
           KEVY FL TA AKYGVGFWKPGSGIIHQI+LENYAFPG+++IGTDSHTPN
Sbjct: 137 KEVYNFLATASAKYGVGFWKPGSGIIHQIVLENYAFPGVMLIGTDSHTPN 186


>SB_17736| Best HMM Match : Aconitase (HMM E-Value=5.2e-16)
          Length = 391

 Score = 34.7 bits (76), Expect = 0.020
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +2

Query: 296 DVILKVAGILTVKGGT 343
           DVILKVAGILTVKGGT
Sbjct: 34  DVILKVAGILTVKGGT 49


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 23/90 (25%), Positives = 42/90 (46%)
 Frame = -3

Query: 316  GHLQDHIFRTRPAGEFTGQFDADNFRTLQLPRDVGHYVHSISTTDTNTQSTKATSIRCVG 137
            G+++DH  RT P+G+ TGQ  A + +T     D+     SI T   ++   K++S  C+ 
Sbjct: 2094 GNIKDH--RTLPSGDLTGQIIALDNKT----SDIDIKSLSIETESEDSYIEKSSSSVCIV 2147

Query: 136  VCADHE*TRERIVLQNDLMDNTRAGLPETD 47
                   +R  I    + ++     + +TD
Sbjct: 2148 DIESENSSRNEIQGNAEAVNKALQAIDDTD 2177


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 256 DADNFRTLQLPRDVGHYVHSISTTDTNTQSTKATS 152
           D+++   L+   + G +    +TTDT TQ+T+ATS
Sbjct: 291 DSESGFNLKWKAEGGAFTERPATTDTTTQTTRATS 325


>SB_6812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 256 DADNFRTLQLPRDVGHYVHSISTTDTNTQSTKATS 152
           D+++   L+   + G +    +TTDT TQ+T+ATS
Sbjct: 102 DSESGFNLKWKAEGGAFTERPATTDTTTQTTRATS 136


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 70  WYYPSDHSGELCVPWSTHDRHRLPHT*W 153
           WY+PS     LC P  TH     P   W
Sbjct: 411 WYHPSKTQAYLCHPTKTHANWNHPSKTW 438


>SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 136 VCADHE*TRERIVLQNDLMDNTRAGLP 56
           +C+D++  R RI+ + D +DN R  +P
Sbjct: 353 MCSDNKQVRWRIMNERDTLDNERESIP 379


>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
          Length = 641

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = -3

Query: 229 LPRDVGHYVHSISTTDTNTQSTKATSIRCVGVCADHE*TRERIVLQNDLMDNTRAGLPET 50
           +P+   HY    + +         + ++ +G+C+  + TRER +   +   N  A LP  
Sbjct: 37  VPQPTTHYNKGFAISSLQVPYVSTSHVKKLGICSFEDYTRERYICSWEYRCN--AFLPHV 94

Query: 49  DSIFSSG 29
            S  ++G
Sbjct: 95  ISCGATG 101


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 330 TVRMPATFKITSFGLVQPVSLPVNLTPITLGHFSSHGMLAIT 205
           T+  P T  ++S  L +PV+  ++  P+T  H  SH    +T
Sbjct: 769 TLSRPVTRTLSSHTLSRPVTRTLSNFPVTPCHALSHAHFPVT 810


>SB_1520| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-19)
          Length = 501

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = -3

Query: 229 LPRDVGHYVHSISTTDTNTQSTKATSIRCVGVCADHE*TRERIVLQNDLMDNTRAGLPET 50
           +P+   HY    + +         + ++ +G+C+  + TRER +   +   N  A LP  
Sbjct: 427 VPQPTTHYNKGFAISSLQVPYVSTSHVKKLGICSFEDYTRERYICSWEYRCN--AFLPHV 484

Query: 49  DSIFSSG 29
            S  ++G
Sbjct: 485 ISCGATG 491


>SB_51323| Best HMM Match : LicD (HMM E-Value=0.0088)
          Length = 695

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 215 NIPWELKCPKVIGVKLTGKLTGWTSPKDVILKVAGILTVK 334
           NI + L    ++GV+ T  +  W    D+++   GIL ++
Sbjct: 449 NITYSLMYGSLLGVERTADILPWDHDLDIMVSYDGILKLE 488


>SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 339 PPFTVRMPATFK-ITSFGLVQPVSLPVNLTPITLGHFSSHG 220
           PPF++   +  + + S   +QPV  P  LTP++L  FSS G
Sbjct: 331 PPFSMASGSEPQYVKSPDRLQPVLTP--LTPVSLASFSSEG 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,695,001
Number of Sequences: 59808
Number of extensions: 196968
Number of successful extensions: 416
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)