Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1181
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   1.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   9.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   9.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             20   9.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 229 LPRDVGHYVHSISTTDTNTQSTKATS 152
           LP+ +  YVH I  T       +ATS
Sbjct: 528 LPKGIDEYVHRIGRTGRVGNRGRATS 553


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -1

Query: 339 PPFTVRMPATFKITSFGLVQPVSLPVNLTPITLGHFSS 226
           PP+ +  P    ITS  + QP   P      T+G   +
Sbjct: 492 PPYRLNKPLMSLITSSEVRQPGKAPNYSVNWTIGQLEA 529


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 254 VKLTGKLTGWTSPKDVILKVAG 319
           +KL G +  W SP  ++  +AG
Sbjct: 276 MKLVGIIIMWYSPFGIMCLIAG 297


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 324 RMPATFKITSFGLVQPVS 271
           R P+TF  ++  L QP+S
Sbjct: 49  RRPSTFGSSNEALPQPIS 66


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -2

Query: 212 PLRPXXXXXXXQYTIHQGHLH 150
           PL+P          +HQG +H
Sbjct: 893 PLQPRFYSISSSPDVHQGQIH 913


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 324 RMPATFKITSFGLVQPVS 271
           R P+TF  ++  L QP+S
Sbjct: 49  RRPSTFGSSNEALPQPIS 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,281
Number of Sequences: 438
Number of extensions: 1696
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)