BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1181 (345 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 1.8 EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 21 5.4 AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 21 5.4 AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 20 9.5 AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 20 9.5 AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 20 9.5 >DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. Length = 630 Score = 22.2 bits (45), Expect = 1.8 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = -3 Query: 229 LPRDVGHYVHSISTTDTNTQSTKATS 152 LP+ + YVH I T +ATS Sbjct: 528 LPKGIDEYVHRIGRTGRVGNRGRATS 553 >EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase protein. Length = 620 Score = 20.6 bits (41), Expect = 5.4 Identities = 11/38 (28%), Positives = 16/38 (42%) Frame = -1 Query: 339 PPFTVRMPATFKITSFGLVQPVSLPVNLTPITLGHFSS 226 PP+ + P ITS + QP P T+G + Sbjct: 492 PPYRLNKPLMSLITSSEVRQPGKAPNYSVNWTIGQLEA 529 >AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter Am-EAAT protein. Length = 543 Score = 20.6 bits (41), Expect = 5.4 Identities = 8/22 (36%), Positives = 13/22 (59%) Frame = +2 Query: 254 VKLTGKLTGWTSPKDVILKVAG 319 +KL G + W SP ++ +AG Sbjct: 276 MKLVGIIIMWYSPFGIMCLIAG 297 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 19.8 bits (39), Expect = 9.5 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = -1 Query: 324 RMPATFKITSFGLVQPVS 271 R P+TF ++ L QP+S Sbjct: 49 RRPSTFGSSNEALPQPIS 66 >AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase protein. Length = 1143 Score = 19.8 bits (39), Expect = 9.5 Identities = 7/21 (33%), Positives = 10/21 (47%) Frame = -2 Query: 212 PLRPXXXXXXXQYTIHQGHLH 150 PL+P +HQG +H Sbjct: 893 PLQPRFYSISSSPDVHQGQIH 913 >AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. Length = 289 Score = 19.8 bits (39), Expect = 9.5 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = -1 Query: 324 RMPATFKITSFGLVQPVS 271 R P+TF ++ L QP+S Sbjct: 49 RRPSTFGSSNEALPQPIS 66 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 92,281 Number of Sequences: 438 Number of extensions: 1696 Number of successful extensions: 6 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6 length of database: 146,343 effective HSP length: 51 effective length of database: 124,005 effective search space used: 7812315 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 39 (20.8 bits)
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