BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1146 (618 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_05_0560 - 23288078-23288370,23288448-23288733 32 0.42 04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 29 3.9 02_01_0667 - 4958924-4959523 29 3.9 >01_05_0560 - 23288078-23288370,23288448-23288733 Length = 192 Score = 31.9 bits (69), Expect = 0.42 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +2 Query: 56 PSPLLT-HVLLSSPPTTIFSIPKHQSLLSSPH 148 P PL H +LSSPP + P H+ + SSPH Sbjct: 121 PRPLRAGHYVLSSPPDDVDHDPDHRYVFSSPH 152 >04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-698513, 698595-698643,698720-698770,698856-698908,699263-699331, 699874-699928,700011-700099,700217-700302,700376-700432, 700575-700716,701637-702032 Length = 494 Score = 28.7 bits (61), Expect = 3.9 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +1 Query: 28 ISVHRKILPPLSSPHARPPFLSSHHHF 108 + + R +LPP +PH PP +H H+ Sbjct: 25 VFLRRSVLPPPPAPHHAPPPPGAHVHY 51 >02_01_0667 - 4958924-4959523 Length = 199 Score = 28.7 bits (61), Expect = 3.9 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +1 Query: 55 PLSSPHARPPFLSSHHHFL 111 PLS PHA+P HHH L Sbjct: 72 PLSLPHAQPQLHHHHHHHL 90 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,877,548 Number of Sequences: 37544 Number of extensions: 154893 Number of successful extensions: 462 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 447 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 460 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1490248872 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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