Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1146
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0560 - 23288078-23288370,23288448-23288733                       32   0.42 
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    29   3.9  
02_01_0667 - 4958924-4959523                                           29   3.9  

>01_05_0560 - 23288078-23288370,23288448-23288733
          Length = 192

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 56  PSPLLT-HVLLSSPPTTIFSIPKHQSLLSSPH 148
           P PL   H +LSSPP  +   P H+ + SSPH
Sbjct: 121 PRPLRAGHYVLSSPPDDVDHDPDHRYVFSSPH 152


>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 28  ISVHRKILPPLSSPHARPPFLSSHHHF 108
           + + R +LPP  +PH  PP   +H H+
Sbjct: 25  VFLRRSVLPPPPAPHHAPPPPGAHVHY 51


>02_01_0667 - 4958924-4959523
          Length = 199

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 55  PLSSPHARPPFLSSHHHFL 111
           PLS PHA+P     HHH L
Sbjct: 72  PLSLPHAQPQLHHHHHHHL 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,877,548
Number of Sequences: 37544
Number of extensions: 154893
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)