Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1146
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              27   0.19 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   3.2  

>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 508 FNIDDDDGAKRNVVMKNFNELFVIANKFNKII 413
           FN  DD G    VV++   E+F+  N  NK+I
Sbjct: 70  FNGYDDGGNFNEVVIREIAEIFLDENGVNKLI 101


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 383 DVCCASEKSLDYFIEFIRDYK*FIKIL 463
           D C  S +S +  ++F+ DYK   K+L
Sbjct: 112 DKCILSSESYNPQVDFVADYKIEGKVL 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,733
Number of Sequences: 438
Number of extensions: 1784
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)