Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1146
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.7  
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU...    27   7.5  
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P...    27   10.0 

>At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase ;similar
           to UDP-glucose:anthocyanin 5-O-glucosyltransferase
           GI:4115563 from [Verbena x hybrida]
          Length = 456

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 144 GEERRD*CLGIEKMVVGGEERRTCVRRGEGWEDFAMDA 31
           GEE R  CL  EK++ GGEE        E W+  A+DA
Sbjct: 403 GEEIRR-CL--EKVMSGGEEAEEMRENAEKWKAMAVDA 437


>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
           Identical to phosphoribosylamine--glycine ligase,
           chloroplast [precursor] SP:P52420 from [Arabidopsis
           thaliana]
          Length = 532

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 423 LNLFAITNNSLKFFITTFRFAPSSS 497
           +NLF+  NN  K F+ + RFA S+S
Sbjct: 16  INLFSNNNNPTKPFLLSLRFASSNS 40


>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family;similar
           to HMG I/Y like protein (GI:15706274) [Glycine
           max];similar to HMR1 protein (GI:4218141) [Antirrhinum
           majus]; similar to high mobility group protein
           (GI:1483173) [Canavalia gladiata]
          Length = 480

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 56  PSPLLTHVLLSSPPTTIFSIPKHQSLLSSPH 148
           P+P   HV+    P T   IP+ Q    SPH
Sbjct: 30  PNPYNNHVVFQPQPQTQTQIPQPQMFQLSPH 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,046,117
Number of Sequences: 28952
Number of extensions: 134121
Number of successful extensions: 426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)