Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1144
         (510 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3IX62 Cluster: Putative uncharacterized protein; n=1; ...    32   8.7  
UniRef50_Q7RKK3 Cluster: DNA-directed RNA polymerase iii largest...    32   8.7  

>UniRef50_A3IX62 Cluster: Putative uncharacterized protein; n=1;
           Cyanothece sp. CCY 0110|Rep: Putative uncharacterized
           protein - Cyanothece sp. CCY 0110
          Length = 382

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -2

Query: 377 DNLLLVIPCLLYNIFTCDNDVVNVNFFLEFLNSIKKLKLLP*PQNVKYL 231
           D ++L    +L+   + DND V +     +L+ ++ LKLL  P N+KYL
Sbjct: 250 DEIILTRRDILHQQISIDNDTVAIVMTHNYLDDLEILKLLI-PSNIKYL 297


>UniRef50_Q7RKK3 Cluster: DNA-directed RNA polymerase iii largest
           subunit; n=3; Plasmodium (Vinckeia)|Rep: DNA-directed
           RNA polymerase iii largest subunit - Plasmodium yoelii
           yoelii
          Length = 693

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +1

Query: 259 NSFSFFIEFKNSKKKFTLTTSLSQV-KML*SKQGITSNRLSIRVIYRRKLYTTRARGATP 435
           N F +FI+ K  KK F + T+L  V      K+ +  N + I  IY   L     +  T 
Sbjct: 612 NDFFYFIKLKYIKKIFQIITTLDTVNSTTIMKESLKRNNMHIAHIYSDILNIINEKKLTS 671

Query: 436 KTHLFG*IKGISAMYSRAVL 495
           + + F   + I A Y+ +VL
Sbjct: 672 QNYFFN--RQIIASYTISVL 689


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 429,995,219
Number of Sequences: 1657284
Number of extensions: 7275866
Number of successful extensions: 16410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16406
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)