BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1144 (510 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_A3IX62 Cluster: Putative uncharacterized protein; n=1; ... 32 8.7 UniRef50_Q7RKK3 Cluster: DNA-directed RNA polymerase iii largest... 32 8.7 >UniRef50_A3IX62 Cluster: Putative uncharacterized protein; n=1; Cyanothece sp. CCY 0110|Rep: Putative uncharacterized protein - Cyanothece sp. CCY 0110 Length = 382 Score = 31.9 bits (69), Expect = 8.7 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = -2 Query: 377 DNLLLVIPCLLYNIFTCDNDVVNVNFFLEFLNSIKKLKLLP*PQNVKYL 231 D ++L +L+ + DND V + +L+ ++ LKLL P N+KYL Sbjct: 250 DEIILTRRDILHQQISIDNDTVAIVMTHNYLDDLEILKLLI-PSNIKYL 297 >UniRef50_Q7RKK3 Cluster: DNA-directed RNA polymerase iii largest subunit; n=3; Plasmodium (Vinckeia)|Rep: DNA-directed RNA polymerase iii largest subunit - Plasmodium yoelii yoelii Length = 693 Score = 31.9 bits (69), Expect = 8.7 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = +1 Query: 259 NSFSFFIEFKNSKKKFTLTTSLSQV-KML*SKQGITSNRLSIRVIYRRKLYTTRARGATP 435 N F +FI+ K KK F + T+L V K+ + N + I IY L + T Sbjct: 612 NDFFYFIKLKYIKKIFQIITTLDTVNSTTIMKESLKRNNMHIAHIYSDILNIINEKKLTS 671 Query: 436 KTHLFG*IKGISAMYSRAVL 495 + + F + I A Y+ +VL Sbjct: 672 QNYFFN--RQIIASYTISVL 689 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 429,995,219 Number of Sequences: 1657284 Number of extensions: 7275866 Number of successful extensions: 16410 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 16035 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 16406 length of database: 575,637,011 effective HSP length: 95 effective length of database: 418,195,031 effective search space used: 30946432294 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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