Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1144
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   2.9  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    25   8.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.7  

>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 229 NKYFTF*GHGNSFSFFIEFKNSKKKFT 309
           N Y  + GHG+  +    +K  KK+FT
Sbjct: 79  NLYMEYCGHGDLANLIQRYKEEKKRFT 105


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 178 EGIERTRSKVHGIKET*AKFNHGFTG 101
           + +E  RSK+  ++ET AK N G  G
Sbjct: 603 QAVEDLRSKITDLRETVAKVNAGDEG 628


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 268 SFFIEFKNSKKKFTLTTSLSQVKM 339
           +FF +FK +KK ++   +L  +KM
Sbjct: 499 NFFSQFKCNKKDYSFVANLGSLKM 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,591
Number of Sequences: 5004
Number of extensions: 33535
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)