BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1144 (510 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 26 2.9 SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 8.7 SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 8.7 >SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosaccharomyces pombe|chr 1|||Manual Length = 722 Score = 26.2 bits (55), Expect = 2.9 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +1 Query: 229 NKYFTF*GHGNSFSFFIEFKNSKKKFT 309 N Y + GHG+ + +K KK+FT Sbjct: 79 NLYMEYCGHGDLANLIQRYKEEKKRFT 105 >SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces pombe|chr 1|||Manual Length = 674 Score = 24.6 bits (51), Expect = 8.7 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -3 Query: 178 EGIERTRSKVHGIKET*AKFNHGFTG 101 + +E RSK+ ++ET AK N G G Sbjct: 603 QAVEDLRSKITDLRETVAKVNAGDEG 628 >SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3131 Score = 24.6 bits (51), Expect = 8.7 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +1 Query: 268 SFFIEFKNSKKKFTLTTSLSQVKM 339 +FF +FK +KK ++ +L +KM Sbjct: 499 NFFSQFKCNKKDYSFVANLGSLKM 522 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,861,591 Number of Sequences: 5004 Number of extensions: 33535 Number of successful extensions: 60 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 60 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 204242806 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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