Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1144
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1058 - 30014796-30014961,30015711-30016450,30016756-300168...    27   6.6  

>03_05_1058 -
           30014796-30014961,30015711-30016450,30016756-30016887,
           30017509-30018021,30019208-30019582
          Length = 641

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -1

Query: 510 TPIVKKHSA*VHSRNALNLAE*VGLGGSTPRSSGIQLASINYANR*PIAS 361
           TPI +K S+ + SRN   L + VGL  S     G ++ SI      P++S
Sbjct: 395 TPIPQKKSSPLQSRNINVLNDSVGLNSSARSEFGRKVPSILQCRPVPLSS 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,040,267
Number of Sequences: 37544
Number of extensions: 182388
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)