Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1144
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37432| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  
SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019)             27   6.8  
SB_11544| Best HMM Match : zf-CCCH (HMM E-Value=9.6)                   27   6.8  
SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_37432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1006

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 17  NNALFLIYLNRQVYSSRLKFVRRSSPILASKSMVKFSLSFFNPVNFGPRSLNPF 178
           N+   ++ L +Q+Y    KFVR   P+LA ++   F+ S    +    ++L  F
Sbjct: 125 NHGATIVTLTKQLYRQLQKFVRNIRPVLADRAEQLFTTSTGGKLTQPDKTLKAF 178


>SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -1

Query: 192 FVLF*KGLRERGPKFTGLKKLKLNLTMDLLANI---GLLRRTNLRRELY 55
           FV+F    + +GP  +G +K K  LT+   ++      L  T LR +LY
Sbjct: 112 FVIFPSSGKHKGPTLSGQQKTKQTLTLQCQSSSRPPSSLNSTELREDLY 160


>SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019)
          Length = 415

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 377 DNLLLVIPCLLYNIFTCDNDVVNVNFFLEFLNSIKKLKL 261
           +N+L+++      +F  DNDV+  +   EF+N+    KL
Sbjct: 371 ENILVILDIPSRRVFVSDNDVITTDNAREFVNNYLADKL 409


>SB_11544| Best HMM Match : zf-CCCH (HMM E-Value=9.6)
          Length = 233

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 246 KREIFIRIMKSQSFNCILFVLF*KGLRERGPKFTGLKKLKL 124
           +R  FI I KS +F  +LFVL    LRE   +   ++K KL
Sbjct: 183 RRATFITIGKSWTFLRLLFVLAYSSLREDFNRHFAVRKRKL 223


>SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 147  TGLKKLKLNLTMDLLANIGLLRRTNLRRELYTWRFKYIKNRALFH 13
            TGL+  +L+L+ D   +IG+ + T    + +TW  + + NR  FH
Sbjct: 1045 TGLELRRLSLSDD--QDIGVTKSTEHELK-FTWLERVVSNRGTFH 1086


>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 318 CRQCKLLFRVFKLNKETKTVTVTSKREIFIRIMKSQSFNCILFVLF 181
           C +   +F+   +NKE KT   T   E+  +  +  S +C+L+  F
Sbjct: 742 CHEASRVFQDRLINKEDKTFFNTIMSEMAHKHFQQASIHCLLYTNF 787


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,084,637
Number of Sequences: 59808
Number of extensions: 218719
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)