Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1144
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z47357-5|CAA87424.1|  446|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical
           protein F35F10.10 protein.
          Length = 693

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 124 KFNHGFTG*YWTTSTHEFKTRTVHLAI*IY*KQSIIS 14
           KF   F G YW  + H+ K + +HL I I   Q +++
Sbjct: 186 KFKTFFIGIYWNINMHDDKKQLIHLKIEILQMQELVN 222


>Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical
           protein Y41E3.16 protein.
          Length = 720

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 211 LRFHYSNKYFTF*GHGNSFSFFIEFKNSKKKFTLTTSLSQVK 336
           L  HY +++FTF G      FF  F   K+ F++T+  S V+
Sbjct: 657 LNLHYVSQFFTFSG------FFGSFSKKKQSFSVTSQASHVE 692


>Z47357-5|CAA87424.1|  446|Caenorhabditis elegans Hypothetical
           protein ZK1128.5 protein.
          Length = 446

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 326 DNDVVNVNFFLEFLNSIKKLKLLP*PQNVKYLLE 225
           D D +N + FLE    + K++ +  PQ +  LL+
Sbjct: 263 DRDTINNDLFLEQCFGVSKMRFMEIPQRLHQLLQ 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,014,757
Number of Sequences: 27780
Number of extensions: 177676
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)