Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1144
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15570.1 68416.m01973 phototropic-responsive NPH3 family prot...    28   3.2  
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein...    27   7.3  
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ...    27   9.7  

>At3g15570.1 68416.m01973 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 452

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 309 IDDIIIASEDVIKQTRNY*Q*VIDSRNLSTQAVYHSSE 422
           ID  + A   V+KQ R     +IDSR LS +A  H+++
Sbjct: 252 IDTYLKAHPQVLKQERKELCRLIDSRKLSPEAALHAAQ 289


>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 457

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 429 YPQDPPIRLN*GHFCYVLTRCA 494
           YP+ PP  LN G + ++L+RC+
Sbjct: 308 YPRPPPKCLNCGRYGHLLSRCS 329


>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 304

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = -1

Query: 393 INYANR*PIASNSLFAL*HLHLR**CRQCKLLFRVFKLNKETKTVTVTSKREIFIRIMKS 214
           +NY N      NS   +  +H +   ++C ++F    LN     V +  K +  + I K 
Sbjct: 174 MNYYNHHLYGDNSFHHIWDIHQQD-QQECSMVFIPTILNTMQHKVAIKLKLKFKLNITKV 232

Query: 213 QSFNCILFVL 184
            +FN +L +L
Sbjct: 233 SAFNTLLLLL 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,284,678
Number of Sequences: 28952
Number of extensions: 160310
Number of successful extensions: 298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)