Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1139
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 34 0.021
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 30 0.34
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 30 0.34
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 29 0.79
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|... 28 1.0
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 27 1.8
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 27 1.8
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 27 2.4
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 4.2
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 7.4
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 25 7.4
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 25 9.7
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 9.7
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 33.9 bits (74), Expect = 0.021
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +1
Query: 184 WHRGLLCKIKKYLPHSYFL-LLESYLSDRRFQVKLRDARSSLFACR-------AGVPQGS 339
W G + +PH + LL S + D+RF +R A ++ + G PQGS
Sbjct: 366 WIEGDIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKALNAGYLTENRYKYDIVGTPQGS 425
Query: 340 VLGPVLYNIFTSDLPQ 387
++ P+L NI+ L +
Sbjct: 426 IVSPILANIYLHQLDE 441
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 29.9 bits (64), Expect = 0.34
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 7 LSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVW 186
LS D+ + HQF R HHST +VH + C +E + S ++ D D W
Sbjct: 185 LSDINDSTICVSCHQF--RLHHSTNLRVH-LRCKTSPVIEESKEISFSYKDEHPILDFTW 241
Query: 187 HR 192
R
Sbjct: 242 AR 243
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 180 PIKSLLYVEKSSRTVLFPLQTISYCTIHSVYLF 82
P+ ++ VEK S V+FP I T+H+ Y+F
Sbjct: 253 PVTEIVSVEKKSTAVVFP-NAIQITTLHARYIF 284
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 28.7 bits (61), Expect = 0.79
Identities = 23/84 (27%), Positives = 35/84 (41%)
Frame = +1
Query: 316 RAGVPQGSVLGPVLYNIFTSDLPQSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVT 495
R G+P+ GP +YN F Q+ +V + AF +P L ++V
Sbjct: 630 RNGLPKSIEKGPFIYNPFNRRQDQNQSKSVLVVDEQVAFSIYFRNP------LSVSVEVQ 683
Query: 496 NTWLTKWRIKASAPKSHHITFTLR 567
+ L K + K H TFT+R
Sbjct: 684 DVHL---ETKGVSAKCSHSTFTMR 704
>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = -3
Query: 479 VCNSLDASLGSLLQLRKAASSAKVATAIS 393
V +LD + G+L+Q+R+ +S +VATA++
Sbjct: 223 VSKALDKAGGALIQIRRLETSKEVATALA 251
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 469 LLQTQLDVTNTWLTKWRIKASAPKSHHITFTLRRDT 576
LL D+T L++ + SA ++ +TFTLR T
Sbjct: 382 LLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGT 417
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +1
Query: 226 HSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYNIFTSDLPQSPEIAV 405
+ YFL + + F +++F C AG+PQG +N +S P I+V
Sbjct: 159 YDYFLHNQDWSPKPLFSALQVYPLATIFNCVAGLPQGFESTVFPWNKTSSTFELDPTISV 218
Query: 406 ATFADD 423
+ +D+
Sbjct: 219 SGMSDE 224
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 542 DLGALALMRHLVSQVLVTSSWVCNSLDASLGSLLQLRKAASSAKVATAIS--GDW 384
D +M+++ Q +S C+S ++ SL+ A KVATA+ GDW
Sbjct: 396 DAKLAGIMQNIFEQSTDVASKYCDSGSNNIPSLVDGANIAGFLKVATAMQAVGDW 450
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = -3
Query: 524 LMRHLVSQVLVTSSWVCNSLDASLGSL--LQLRKA---ASSAKVATAISGDW 384
L+ + +S +L+ S +CNSLD SL L + LR + +S ++ SG+W
Sbjct: 246 LLSYALSFILMILSHICNSLDDSLYRLFCIYLRFSMIDPTSGFPSSTASGNW 297
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 298 SSLFACRAGVPQGSVLGPVLYNIFTSDL 381
+S + + G+PQGS+L L + + DL
Sbjct: 695 NSQYLQKVGIPQGSILSSFLCHFYMEDL 722
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 442 SSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKS 543
+ DPN ++LL+ QLD T +L A++P+S
Sbjct: 1222 TKDPN-GTKLLEYQLDQTEVYLDLSGTHAASPRS 1254
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 587 SNSATIHCRNQPC 625
S SAT+H NQPC
Sbjct: 538 SRSATMHAENQPC 550
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 133 LSSPNNFLLYNTLCVPVLWLSGASGSQI 50
LSS +N + L PVL+L GA+ S+I
Sbjct: 64 LSSNSNARVAIALAEPVLYLPGATSSEI 91
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 9.7
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 452 LMKRPDCCKPSSMSLTLG*PSGALKLAPPSLTTSHLP*DVILVLQSNSATIHCRNQPCVK 631
L R D + S MS T+G P ALK + ++ + D + ATI + +P +
Sbjct: 69 LSSRIDANRASIMSATMGTPPSALKFSKKKISRPVVSEDTFKD-KLPRATIPVKPEPQPQ 127
Query: 632 YLGIPLGP 655
Y IP P
Sbjct: 128 Y-KIPAAP 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,923
Number of Sequences: 5004
Number of extensions: 63043
Number of successful extensions: 197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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