BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1139 (664 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 34 0.021 SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 30 0.34 SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 30 0.34 SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 29 0.79 SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|... 28 1.0 SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 27 1.8 SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 27 1.8 SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 27 2.4 SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.2 SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 4.2 SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 7.4 SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 25 7.4 SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 25 9.7 SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 9.7 >SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 807 Score = 33.9 bits (74), Expect = 0.021 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +1 Query: 184 WHRGLLCKIKKYLPHSYFL-LLESYLSDRRFQVKLRDARSSLFACR-------AGVPQGS 339 W G + +PH + LL S + D+RF +R A ++ + G PQGS Sbjct: 366 WIEGDIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKALNAGYLTENRYKYDIVGTPQGS 425 Query: 340 VLGPVLYNIFTSDLPQ 387 ++ P+L NI+ L + Sbjct: 426 IVSPILANIYLHQLDE 441 >SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosaccharomyces pombe|chr 1|||Manual Length = 259 Score = 29.9 bits (64), Expect = 0.34 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +1 Query: 7 LSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVW 186 LS D+ + HQF R HHST +VH + C +E + S ++ D D W Sbjct: 185 LSDINDSTICVSCHQF--RLHHSTNLRVH-LRCKTSPVIEESKEISFSYKDEHPILDFTW 241 Query: 187 HR 192 R Sbjct: 242 AR 243 >SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 764 Score = 29.9 bits (64), Expect = 0.34 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -2 Query: 180 PIKSLLYVEKSSRTVLFPLQTISYCTIHSVYLF 82 P+ ++ VEK S V+FP I T+H+ Y+F Sbjct: 253 PVTEIVSVEKKSTAVVFP-NAIQITTLHARYIF 284 >SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1210 Score = 28.7 bits (61), Expect = 0.79 Identities = 23/84 (27%), Positives = 35/84 (41%) Frame = +1 Query: 316 RAGVPQGSVLGPVLYNIFTSDLPQSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVT 495 R G+P+ GP +YN F Q+ +V + AF +P L ++V Sbjct: 630 RNGLPKSIEKGPFIYNPFNRRQDQNQSKSVLVVDEQVAFSIYFRNP------LSVSVEVQ 683 Query: 496 NTWLTKWRIKASAPKSHHITFTLR 567 + L K + K H TFT+R Sbjct: 684 DVHL---ETKGVSAKCSHSTFTMR 704 >SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|||Manual Length = 282 Score = 28.3 bits (60), Expect = 1.0 Identities = 12/29 (41%), Positives = 22/29 (75%) Frame = -3 Query: 479 VCNSLDASLGSLLQLRKAASSAKVATAIS 393 V +LD + G+L+Q+R+ +S +VATA++ Sbjct: 223 VSKALDKAGGALIQIRRLETSKEVATALA 251 >SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces pombe|chr 2|||Manual Length = 512 Score = 27.5 bits (58), Expect = 1.8 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 469 LLQTQLDVTNTWLTKWRIKASAPKSHHITFTLRRDT 576 LL D+T L++ + SA ++ +TFTLR T Sbjct: 382 LLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGT 417 >SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosaccharomyces pombe|chr 3|||Manual Length = 759 Score = 27.5 bits (58), Expect = 1.8 Identities = 17/66 (25%), Positives = 30/66 (45%) Frame = +1 Query: 226 HSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYNIFTSDLPQSPEIAV 405 + YFL + + F +++F C AG+PQG +N +S P I+V Sbjct: 159 YDYFLHNQDWSPKPLFSALQVYPLATIFNCVAGLPQGFESTVFPWNKTSSTFELDPTISV 218 Query: 406 ATFADD 423 + +D+ Sbjct: 219 SGMSDE 224 >SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 451 Score = 27.1 bits (57), Expect = 2.4 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = -3 Query: 542 DLGALALMRHLVSQVLVTSSWVCNSLDASLGSLLQLRKAASSAKVATAIS--GDW 384 D +M+++ Q +S C+S ++ SL+ A KVATA+ GDW Sbjct: 396 DAKLAGIMQNIFEQSTDVASKYCDSGSNNIPSLVDGANIAGFLKVATAMQAVGDW 450 >SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Manual Length = 899 Score = 26.2 bits (55), Expect = 4.2 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Frame = -3 Query: 524 LMRHLVSQVLVTSSWVCNSLDASLGSL--LQLRKA---ASSAKVATAISGDW 384 L+ + +S +L+ S +CNSLD SL L + LR + +S ++ SG+W Sbjct: 246 LLSYALSFILMILSHICNSLDDSLYRLFCIYLRFSMIDPTSGFPSSTASGNW 297 >SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 988 Score = 26.2 bits (55), Expect = 4.2 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +1 Query: 298 SSLFACRAGVPQGSVLGPVLYNIFTSDL 381 +S + + G+PQGS+L L + + DL Sbjct: 695 NSQYLQKVGIPQGSILSSFLCHFYMEDL 722 >SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr 1|||Manual Length = 1778 Score = 25.4 bits (53), Expect = 7.4 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +1 Query: 442 SSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKS 543 + DPN ++LL+ QLD T +L A++P+S Sbjct: 1222 TKDPN-GTKLLEYQLDQTEVYLDLSGTHAASPRS 1254 >SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubiquinone oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual Length = 632 Score = 25.4 bits (53), Expect = 7.4 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = +2 Query: 587 SNSATIHCRNQPC 625 S SAT+H NQPC Sbjct: 538 SRSATMHAENQPC 550 >SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr 2|||Manual Length = 530 Score = 25.0 bits (52), Expect = 9.7 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -1 Query: 133 LSSPNNFLLYNTLCVPVLWLSGASGSQI 50 LSS +N + L PVL+L GA+ S+I Sbjct: 64 LSSNSNARVAIALAEPVLYLPGATSSEI 91 >SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 932 Score = 25.0 bits (52), Expect = 9.7 Identities = 21/68 (30%), Positives = 31/68 (45%) Frame = +2 Query: 452 LMKRPDCCKPSSMSLTLG*PSGALKLAPPSLTTSHLP*DVILVLQSNSATIHCRNQPCVK 631 L R D + S MS T+G P ALK + ++ + D + ATI + +P + Sbjct: 69 LSSRIDANRASIMSATMGTPPSALKFSKKKISRPVVSEDTFKD-KLPRATIPVKPEPQPQ 127 Query: 632 YLGIPLGP 655 Y IP P Sbjct: 128 Y-KIPAAP 134 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,983,923 Number of Sequences: 5004 Number of extensions: 63043 Number of successful extensions: 197 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 197 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 301829700 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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