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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1139
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    34   0.021
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    30   0.34 
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    30   0.34 
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    29   0.79 
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...    28   1.0  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    27   1.8  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   1.8  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    27   2.4  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   4.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   4.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.4  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    25   7.4  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   9.7  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   9.7  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
 Frame = +1

Query: 184 WHRGLLCKIKKYLPHSYFL-LLESYLSDRRFQVKLRDARSSLFACR-------AGVPQGS 339
           W  G +      +PH   + LL S + D+RF   +R A ++ +           G PQGS
Sbjct: 366 WIEGDIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKALNAGYLTENRYKYDIVGTPQGS 425

Query: 340 VLGPVLYNIFTSDLPQ 387
           ++ P+L NI+   L +
Sbjct: 426 IVSPILANIYLHQLDE 441


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +1

Query: 7   LSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVW 186
           LS   D+   +  HQF  R HHST  +VH + C     +E  +  S ++ D     D  W
Sbjct: 185 LSDINDSTICVSCHQF--RLHHSTNLRVH-LRCKTSPVIEESKEISFSYKDEHPILDFTW 241

Query: 187 HR 192
            R
Sbjct: 242 AR 243


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 180 PIKSLLYVEKSSRTVLFPLQTISYCTIHSVYLF 82
           P+  ++ VEK S  V+FP   I   T+H+ Y+F
Sbjct: 253 PVTEIVSVEKKSTAVVFP-NAIQITTLHARYIF 284


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = +1

Query: 316 RAGVPQGSVLGPVLYNIFTSDLPQSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVT 495
           R G+P+    GP +YN F     Q+   +V    +  AF     +P      L   ++V 
Sbjct: 630 RNGLPKSIEKGPFIYNPFNRRQDQNQSKSVLVVDEQVAFSIYFRNP------LSVSVEVQ 683

Query: 496 NTWLTKWRIKASAPKSHHITFTLR 567
           +  L     K  + K  H TFT+R
Sbjct: 684 DVHL---ETKGVSAKCSHSTFTMR 704


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = -3

Query: 479 VCNSLDASLGSLLQLRKAASSAKVATAIS 393
           V  +LD + G+L+Q+R+  +S +VATA++
Sbjct: 223 VSKALDKAGGALIQIRRLETSKEVATALA 251


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 469 LLQTQLDVTNTWLTKWRIKASAPKSHHITFTLRRDT 576
           LL    D+T   L++  +  SA ++  +TFTLR  T
Sbjct: 382 LLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGT 417


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 226 HSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYNIFTSDLPQSPEIAV 405
           + YFL  + +     F        +++F C AG+PQG       +N  +S     P I+V
Sbjct: 159 YDYFLHNQDWSPKPLFSALQVYPLATIFNCVAGLPQGFESTVFPWNKTSSTFELDPTISV 218

Query: 406 ATFADD 423
           +  +D+
Sbjct: 219 SGMSDE 224


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 542 DLGALALMRHLVSQVLVTSSWVCNSLDASLGSLLQLRKAASSAKVATAIS--GDW 384
           D     +M+++  Q    +S  C+S   ++ SL+     A   KVATA+   GDW
Sbjct: 396 DAKLAGIMQNIFEQSTDVASKYCDSGSNNIPSLVDGANIAGFLKVATAMQAVGDW 450


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = -3

Query: 524 LMRHLVSQVLVTSSWVCNSLDASLGSL--LQLRKA---ASSAKVATAISGDW 384
           L+ + +S +L+  S +CNSLD SL  L  + LR +    +S   ++  SG+W
Sbjct: 246 LLSYALSFILMILSHICNSLDDSLYRLFCIYLRFSMIDPTSGFPSSTASGNW 297


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 298 SSLFACRAGVPQGSVLGPVLYNIFTSDL 381
           +S +  + G+PQGS+L   L + +  DL
Sbjct: 695 NSQYLQKVGIPQGSILSSFLCHFYMEDL 722


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 442  SSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKS 543
            + DPN  ++LL+ QLD T  +L      A++P+S
Sbjct: 1222 TKDPN-GTKLLEYQLDQTEVYLDLSGTHAASPRS 1254


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 587 SNSATIHCRNQPC 625
           S SAT+H  NQPC
Sbjct: 538 SRSATMHAENQPC 550


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 133 LSSPNNFLLYNTLCVPVLWLSGASGSQI 50
           LSS +N  +   L  PVL+L GA+ S+I
Sbjct: 64  LSSNSNARVAIALAEPVLYLPGATSSEI 91


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +2

Query: 452 LMKRPDCCKPSSMSLTLG*PSGALKLAPPSLTTSHLP*DVILVLQSNSATIHCRNQPCVK 631
           L  R D  + S MS T+G P  ALK +   ++   +  D     +   ATI  + +P  +
Sbjct: 69  LSSRIDANRASIMSATMGTPPSALKFSKKKISRPVVSEDTFKD-KLPRATIPVKPEPQPQ 127

Query: 632 YLGIPLGP 655
           Y  IP  P
Sbjct: 128 Y-KIPAAP 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,923
Number of Sequences: 5004
Number of extensions: 63043
Number of successful extensions: 197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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