Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1139
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0464 - 8683232-8684596 30 1.9
10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539 29 2.5
06_03_0738 + 24000422-24000952,24001491-24002237 29 2.5
12_02_1173 + 26692030-26692379,26692478-26692565,26693309-266934... 29 4.4
12_02_1172 + 26680246-26680595,26680693-26680780,26681478-266816... 29 4.4
05_02_0124 + 6849034-6851502 28 5.8
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 28 5.8
02_05_0510 + 29637160-29637506,29637714-29637775,29638047-296381... 28 5.8
02_05_0218 + 26860319-26862448 28 5.8
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604... 28 7.6
>03_02_0464 - 8683232-8684596
Length = 454
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 375 ASKNVVEDRTKYGALGHSGSAGKERRSGITELDLKPSVT 259
+++ + ED T +GA G G G +R I+ L PSV+
Sbjct: 37 STQTLEEDDTGHGADGRGGGGGGSKRRKISPLAFSPSVS 75
>10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539
Length = 702
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 34 IIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDV 162
+IP H+FG +H +T E V + R +YCS LDV
Sbjct: 328 LIPWHEFG--EHFNTFELVSMYLAPSFQAILRSKYCSLIELDV 368
>06_03_0738 + 24000422-24000952,24001491-24002237
Length = 425
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -2
Query: 558 KCDVVRLGGASFNAPLGQPSVSDIELGLQQSGRFIRITATTEEGCI-IGKG 409
+C +++ G + NAP P+ I +G T T + CI IG G
Sbjct: 206 RCKDIKISGVTINAPGDSPNTDGIHMGDSSKITIAATTIGTGDDCISIGPG 256
>12_02_1173 +
26692030-26692379,26692478-26692565,26693309-26693436,
26693514-26693705,26693810-26694012,26694127-26694290,
26694419-26694499,26694592-26694758,26694839-26694944,
26695097-26695347,26695388-26695508,26695594-26695722,
26695813-26696181
Length = 782
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 286 RDARSSLFACRAGVPQGSVLGPVLYNIFTSDLPQSPEIA 402
R L R GV G+ +GP +Y+I + +P + EIA
Sbjct: 691 RSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 729
>12_02_1172 +
26680246-26680595,26680693-26680780,26681478-26681605,
26681683-26681874,26681979-26682181,26682296-26682459,
26682597-26682677,26682770-26682936,26683015-26683120,
26683269-26683519,26683610-26683682,26683751-26683879,
26683963-26684331
Length = 766
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 286 RDARSSLFACRAGVPQGSVLGPVLYNIFTSDLPQSPEIA 402
R L R GV G+ +GP +Y+I + +P + EIA
Sbjct: 675 RSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIA 713
>05_02_0124 + 6849034-6851502
Length = 822
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 10 SPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWH 189
S L AC I DH G + H I+ T+ N L S + ++ F++++
Sbjct: 363 SSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYE 422
Query: 190 RGLL 201
R ++
Sbjct: 423 RSMI 426
>03_01_0522 -
3919120-3919696,3919835-3919919,3919955-3919985,
3920078-3920158,3920271-3920338,3920645-3920698,
3921023-3922379
Length = 750
Score = 28.3 bits (60), Expect = 5.8
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Frame = +1
Query: 259 SDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYNIFTSDLPQSPEIAVATFADDAAFLS 438
S + F +R FA + G + P+ + +F S P +++ A L
Sbjct: 633 SSQPFCPSVRSLAMQTFATPGPILPGPPVTPMQWPVFIS--PPQQQLSACAVWPQAGTLQ 690
Query: 439 CSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKSHHIT---FTLRRDTCPPVK 591
P+ R Q V W+TK ++ A+ K H++ FT + C +K
Sbjct: 691 QELPPHIPFRAHQ----VLEQWITKTKLSATITKPHYLLQKHFTKPPNGCTSLK 740
>02_05_0510 +
29637160-29637506,29637714-29637775,29638047-29638161,
29638296-29638419,29638604-29638684,29639122-29639463,
29639562-29639728,29639810-29640639,29641103-29642568
Length = 1177
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 214 KYLPHSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYNIFTSDLPQSP 393
++ P Y+ L +YL ++R+ ++ + SL G+P+ SV+ V + Q
Sbjct: 349 EFQPAYYYQLAANYLREKRYALEFSSSSVSLTKGVNGLPE-SVMPSVYVGQYVRLFEQGD 407
Query: 394 EIAVATFAD 420
+AV +D
Sbjct: 408 TVAVLPLSD 416
>02_05_0218 + 26860319-26862448
Length = 709
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -2
Query: 372 SKNVVEDRTKYGALGHSGSAGKERRSGITELDLKPSVTEIRL 247
S TK+GA G G GKE G EL P ++ L
Sbjct: 77 SSTAAAGATKWGAPGEHGGGGKEEWGGGCELPPIPGALDVGL 118
>04_03_0199 - 12559351-12559433,12559693-12559827,12560260-12560437,
12560848-12561389,12561398-12564827
Length = 1455
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 361 NIFTSDLPQSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTK 513
N+F+SD+PQ P +T D A + +D + T+ +T WL++
Sbjct: 966 NLFSSDVPQEP---TSTREDMVAGIGNRNDRPSLELVSITECGITGKWLSQ 1013
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,104,015
Number of Sequences: 37544
Number of extensions: 432116
Number of successful extensions: 1313
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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