Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1139
(664 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 210 1e-54
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 204 8e-53
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 202 4e-52
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 192 5e-49
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 179 4e-45
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 177 8e-45
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 177 8e-45
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 174 1e-43
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 172 3e-43
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 172 3e-43
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 172 3e-43
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 172 3e-43
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 172 3e-43
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 171 5e-43
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 156 3e-38
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 156 3e-38
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 156 3e-38
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 156 3e-38
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 153 2e-37
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 136 3e-32
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 136 3e-32
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 79 4e-15
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 67 2e-11
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 56 6e-08
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 49 7e-06
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 43 3e-04
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 36 0.065
AE014297-4087|AAF56679.2| 404|Drosophila melanogaster CG31063-P... 29 4.3
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 210 bits (513), Expect = 1e-54
Identities = 102/196 (52%), Positives = 129/196 (65%)
Frame = +1
Query: 31 HIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKI 210
+IIP HQFGFR+ H TIEQV+R+ IR E +EYC+A FLDV QAFD+VW GL+ KI
Sbjct: 540 NIIPAHQFGFRESHGTIEQVNRITTEIRTAFEYREYCTAVFLDVSQAFDKVWLDGLMFKI 599
Query: 211 KKYLPHSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYNIFTSDLPQS 390
K LP S LL+SYL DR+F V+ A S++ AGVPQGSVLGP LY I+T+D+P +
Sbjct: 600 KISLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYLIYTADIPTN 659
Query: 391 PEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKSHHITFTLRR 570
+ V+TFADD A LS S P +A+ L L WL+ WRIK + K H+TFTL R
Sbjct: 660 SRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIKKWLSDWRIKVNEQKCKHVTFTLNR 719
Query: 571 DTCPPVKLGHDTLPQS 618
CPP+ L LP++
Sbjct: 720 QDCPPLLLNSIPLPKA 735
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 204 bits (498), Expect = 8e-53
Identities = 100/205 (48%), Positives = 129/205 (62%)
Frame = +1
Query: 4 RLSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRV 183
R+SP L + +P HQFGFR+ H TIEQV+R+ IR E +EYC+A FLDV QAFDRV
Sbjct: 529 RISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRV 588
Query: 184 WHRGLLCKIKKYLPHSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYN 363
W GLL KI K LP + LL+SYL +R F ++ + S A AGVPQGSVLGP+LY
Sbjct: 589 WLDGLLFKIIKLLPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYT 648
Query: 364 IFTSDLPQSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKS 543
++T+D P + +TFADD A LS S P +A+ LL L WL WRI + K
Sbjct: 649 LYTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKC 708
Query: 544 HHITFTLRRDTCPPVKLGHDTLPQS 618
+TFTL + TCPP+ L + +PQ+
Sbjct: 709 KQVTFTLNKQTCPPLVLNNICIPQA 733
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 202 bits (492), Expect = 4e-52
Identities = 99/205 (48%), Positives = 128/205 (62%)
Frame = +1
Query: 4 RLSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRV 183
R+SP L + +P HQFGFR+ H TIEQV+R+ IR E +EYC+A FLDV QAFDRV
Sbjct: 529 RISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRV 588
Query: 184 WHRGLLCKIKKYLPHSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYN 363
W GLL KI K LP + LL+SYL + F ++ + S A AGVPQGSVLGP+LY
Sbjct: 589 WLDGLLFKIIKLLPQNTHKLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYT 648
Query: 364 IFTSDLPQSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKS 543
++T+D P + +TFADD A LS S P +A+ LL L WL WRI + K
Sbjct: 649 LYTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKC 708
Query: 544 HHITFTLRRDTCPPVKLGHDTLPQS 618
+TFTL + TCPP+ L + +PQ+
Sbjct: 709 KQVTFTLNKQTCPPLVLNNICIPQA 733
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 192 bits (467), Expect = 5e-49
Identities = 100/203 (49%), Positives = 133/203 (65%), Gaps = 8/203 (3%)
Frame = +1
Query: 4 RLSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRV 183
RL+ + I+PDHQFGFR+ HST+EQVHR+ I + KEYC+A F+D+QQAFDRV
Sbjct: 534 RLNDIMTERRILPDHQFGFRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRV 593
Query: 184 WHRGLLCKIKKYLPHSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYN 363
WH GL+ K+KK P Y+ +L+SYL DRRF V++R++ S RAGVPQGSVLGP+LY+
Sbjct: 594 WHDGLISKVKKLFPAPYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYS 653
Query: 364 IFTSDLP-------QSPEIA-VATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWR 519
+FT+DLP P A +AT+ADD A L S+ NEA+R LQ L W +W
Sbjct: 654 VFTADLPCPNAYHMADPRKALLATYADDIALLYSSNCCNEAARGLQEYLTTLAAWCKRWI 713
Query: 520 IKASAPKSHHITFTLRRDTCPPV 588
+K + K+ + FTL+ T PV
Sbjct: 714 LKVNPQKTINPCFTLK--TLSPV 734
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 179 bits (435), Expect = 4e-45
Identities = 93/210 (44%), Positives = 132/210 (62%), Gaps = 6/210 (2%)
Frame = +1
Query: 4 RLSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRV 183
R+ ++A I P+HQFGFR H T+EQ+HRV I + KEYC++ FLD+++AFDRV
Sbjct: 533 RIVSIMEAQGITPEHQFGFRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRV 592
Query: 184 WHRGLLCKIKKYLPHSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYN 363
WH GL KIK+ LP YF LL+SYL RRF V+ A S+ AGVPQGSVLGP+LY
Sbjct: 593 WHIGLQLKIKQTLPAPYFGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYC 652
Query: 364 IFTSDLPQSPEIA------VATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIK 525
+++ D+PQ P+++ +ATFADD S ++A+ +Q + W +W I
Sbjct: 653 LYSHDMPQ-PDVSLYGKSMLATFADDVCVTYRSRCEHDAADGIQDFAYRFSEWARRWNIG 711
Query: 526 ASAPKSHHITFTLRRDTCPPVKLGHDTLPQ 615
++ KS+++ FTL+R T PPV + +PQ
Sbjct: 712 INSSKSNNVCFTLKRRTPPPVYIEEVPVPQ 741
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 177 bits (432), Expect = 8e-45
Identities = 90/205 (43%), Positives = 118/205 (57%), Gaps = 8/205 (3%)
Frame = +1
Query: 4 RLSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRV 183
RL C D IP QFGFR H T EQ+HRV +E KEY AFLD+QQAFDRV
Sbjct: 535 RLLTCKDVTKAIPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRV 594
Query: 184 WHRGLLCKIKKYLPHSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYN 363
WH GLL K K+ P +L+++S+L +R F V + +SS+ AGVPQGSVLGP LY+
Sbjct: 595 WHPGLLYKAKRLFPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYS 654
Query: 364 IFTSDLP--------QSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWR 519
+F SD+P ++ +AT+ADD A L+ S A+ LQ LD W W
Sbjct: 655 VFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWN 714
Query: 520 IKASAPKSHHITFTLRRDTCPPVKL 594
++ +A K ++TF R +CP V L
Sbjct: 715 VRINAEKCANVTFANRTGSCPGVSL 739
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 177 bits (432), Expect = 8e-45
Identities = 90/205 (43%), Positives = 118/205 (57%), Gaps = 8/205 (3%)
Frame = +1
Query: 4 RLSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRV 183
RL C D IP QFGFR H T EQ+HRV +E KEY AFLD+QQAFDRV
Sbjct: 337 RLLTCKDVTKAIPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRV 396
Query: 184 WHRGLLCKIKKYLPHSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYN 363
WH GLL K K+ P +L+++S+L +R F V + +SS+ AGVPQGSVLGP LY+
Sbjct: 397 WHPGLLYKAKRLFPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYS 456
Query: 364 IFTSDLP--------QSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWR 519
+F SD+P ++ +AT+ADD A L+ S A+ LQ LD W W
Sbjct: 457 VFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWN 516
Query: 520 IKASAPKSHHITFTLRRDTCPPVKL 594
++ +A K ++TF R +CP V L
Sbjct: 517 VRINAEKCANVTFANRTGSCPGVSL 541
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 174 bits (423), Expect = 1e-43
Identities = 90/188 (47%), Positives = 120/188 (63%), Gaps = 9/188 (4%)
Frame = +1
Query: 37 IPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKK 216
IP HQFGFRK H T +Q+ RV I ERKEYCSA FLD+ +AFDRVWH GLL K+ K
Sbjct: 601 IPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK 660
Query: 217 YLPHSYFLLLESYLSDRRFQVKLRDARSSLFA-CRAGVPQGSVLGPVLYNIFTSDLP--- 384
LP++ +++LESYL++R F+VK + +S AGVPQGS LGP+LY+IF+SD+P
Sbjct: 661 ILPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPY 720
Query: 385 ---QSP--EIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKSHH 549
SP I ++T+ADD LS + A+R + L + W KW I +A K+ H
Sbjct: 721 IYRPSPTQRIMLSTYADDTIVLSSDTLATAATRNNENYLKTFSDWADKWGISVNAAKTGH 780
Query: 550 ITFTLRRD 573
+ FTL+ D
Sbjct: 781 VIFTLKND 788
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial cds.
).
Length = 964
Score = 172 bits (419), Expect = 3e-43
Identities = 89/188 (47%), Positives = 119/188 (63%), Gaps = 9/188 (4%)
Frame = +1
Query: 37 IPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKK 216
IP HQFGFRK H T +Q+ RV I ERKEYCSA FLD+ +AFDRVWH GLL K+ K
Sbjct: 473 IPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK 532
Query: 217 YLPHSYFLLLESYLSDRRFQVKLRDARSSLFA-CRAGVPQGSVLGPVLYNIFTSDLP--- 384
LP++ +++LESYL++R F+VK + +S AGVPQGS LGP+LY+IF+SD+P
Sbjct: 533 ILPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPH 592
Query: 385 ---QSP--EIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKSHH 549
SP I ++T+ADD LS A+R + L + W KW I +A K+ H
Sbjct: 593 IYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGH 652
Query: 550 ITFTLRRD 573
+ +TL+ D
Sbjct: 653 VIYTLKND 660
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 172 bits (419), Expect = 3e-43
Identities = 89/188 (47%), Positives = 119/188 (63%), Gaps = 9/188 (4%)
Frame = +1
Query: 37 IPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKK 216
IP HQFGFRK H T +Q+ RV I ERKEYCSA FLD+ +AFDRVWH GLL K+ K
Sbjct: 589 IPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK 648
Query: 217 YLPHSYFLLLESYLSDRRFQVKLRDARSSLFA-CRAGVPQGSVLGPVLYNIFTSDLP--- 384
LP++ +++LESYL++R F+VK + +S AGVPQGS LGP+LY+IF+SD+P
Sbjct: 649 ILPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPH 708
Query: 385 ---QSP--EIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKSHH 549
SP I ++T+ADD LS A+R + L + W KW I +A K+ H
Sbjct: 709 IYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGH 768
Query: 550 ITFTLRRD 573
+ +TL+ D
Sbjct: 769 VIYTLKND 776
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 172 bits (419), Expect = 3e-43
Identities = 89/188 (47%), Positives = 119/188 (63%), Gaps = 9/188 (4%)
Frame = +1
Query: 37 IPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKK 216
IP HQFGFRK H T +Q+ RV I ERKEYCSA FLD+ +AFDRVWH GLL K+ K
Sbjct: 589 IPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK 648
Query: 217 YLPHSYFLLLESYLSDRRFQVKLRDARSSLFA-CRAGVPQGSVLGPVLYNIFTSDLP--- 384
LP++ +++LESYL++R F+VK + +S AGVPQGS LGP+LY+IF+SD+P
Sbjct: 649 ILPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPH 708
Query: 385 ---QSP--EIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKSHH 549
SP I ++T+ADD LS A+R + L + W KW I +A K+ H
Sbjct: 709 IYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGH 768
Query: 550 ITFTLRRD 573
+ +TL+ D
Sbjct: 769 VIYTLKND 776
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 172 bits (419), Expect = 3e-43
Identities = 89/188 (47%), Positives = 119/188 (63%), Gaps = 9/188 (4%)
Frame = +1
Query: 37 IPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKK 216
IP HQFGFRK H T +Q+ RV I ERKEYCSA FLD+ +AFDRVWH GLL K+ K
Sbjct: 551 IPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK 610
Query: 217 YLPHSYFLLLESYLSDRRFQVKLRDARSSLFA-CRAGVPQGSVLGPVLYNIFTSDLP--- 384
LP++ +++LESYL++R F+VK + +S AGVPQGS LGP+LY+IF+SD+P
Sbjct: 611 ILPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPH 670
Query: 385 ---QSP--EIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKSHH 549
SP I ++T+ADD LS A+R + L + W KW I +A K+ H
Sbjct: 671 IYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGH 730
Query: 550 ITFTLRRD 573
+ +TL+ D
Sbjct: 731 VIYTLKND 738
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 172 bits (419), Expect = 3e-43
Identities = 89/188 (47%), Positives = 119/188 (63%), Gaps = 9/188 (4%)
Frame = +1
Query: 37 IPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKK 216
IP HQFGFRK H T +Q+ RV I ERKEYCSA FLD+ +AFDRVWH GLL K+ K
Sbjct: 589 IPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK 648
Query: 217 YLPHSYFLLLESYLSDRRFQVKLRDARSSLFA-CRAGVPQGSVLGPVLYNIFTSDLP--- 384
LP++ +++LESYL++R F+VK + +S AGVPQGS LGP+LY+IF+SD+P
Sbjct: 649 ILPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPH 708
Query: 385 ---QSP--EIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKSHH 549
SP I ++T+ADD LS A+R + L + W KW I +A K+ H
Sbjct: 709 IYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGH 768
Query: 550 ITFTLRRD 573
+ +TL+ D
Sbjct: 769 VIYTLKND 776
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 171 bits (417), Expect = 5e-43
Identities = 89/188 (47%), Positives = 120/188 (63%), Gaps = 9/188 (4%)
Frame = +1
Query: 37 IPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKK 216
IP HQFGFRK H + +Q+ RV I ERKEYCSA FLD+ +AFDRVWH GLL K+ K
Sbjct: 589 IPLHQFGFRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAK 648
Query: 217 YLPHSYFLLLESYLSDRRFQVKLRDARSSLFA-CRAGVPQGSVLGPVLYNIFTSDLP--- 384
LP++ +++LESYL++R F+VK + +S AGVPQGS LGP+LY+IF+SD+P
Sbjct: 649 ILPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPY 708
Query: 385 ---QSP--EIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKSHH 549
SP I ++T+ADD LS + A+R + L + W KW I +A K+ H
Sbjct: 709 IYRPSPTERIMLSTYADDTIVLSSDTLATAATRNNENYLKSFSDWADKWGISVNAAKTGH 768
Query: 550 ITFTLRRD 573
+ FTL+ D
Sbjct: 769 VIFTLKND 776
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 156 bits (378), Expect = 3e-38
Identities = 86/196 (43%), Positives = 114/196 (58%), Gaps = 17/196 (8%)
Frame = +1
Query: 37 IPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKK 216
IP HQFGFRK H Q+ RV I + K+ CSA FLD+ +AFDRVWH GLL K+ +
Sbjct: 145 IPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSR 204
Query: 217 YLPHSYFLLLESYLSDRRFQVKL-RDARSSLFACRAGVPQGSVLGPVLYNIFTSDLP--- 384
+P F LLE+YLS+R F V++ + S + RAGVPQGS+LGPVLY+I++SD+P
Sbjct: 205 LIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPI 264
Query: 385 -------------QSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIK 525
I +AT+ADD LS S A L Q L+V W KW I
Sbjct: 265 VKDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIA 324
Query: 526 ASAPKSHHITFTLRRD 573
+A K+ HI F+L+++
Sbjct: 325 INAKKTGHILFSLKKE 340
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 156 bits (378), Expect = 3e-38
Identities = 86/196 (43%), Positives = 114/196 (58%), Gaps = 17/196 (8%)
Frame = +1
Query: 37 IPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKK 216
IP HQFGFRK H Q+ RV I + K+ CSA FLD+ +AFDRVWH GLL K+ +
Sbjct: 592 IPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSR 651
Query: 217 YLPHSYFLLLESYLSDRRFQVKL-RDARSSLFACRAGVPQGSVLGPVLYNIFTSDLP--- 384
+P F LLE+YLS+R F V++ + S + RAGVPQGS+LGPVLY+I++SD+P
Sbjct: 652 LIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPI 711
Query: 385 -------------QSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIK 525
I +AT+ADD LS S A L Q L+V W KW I
Sbjct: 712 VKDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIA 771
Query: 526 ASAPKSHHITFTLRRD 573
+A K+ HI F+L+++
Sbjct: 772 INAKKTGHILFSLKKE 787
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 156 bits (378), Expect = 3e-38
Identities = 86/196 (43%), Positives = 114/196 (58%), Gaps = 17/196 (8%)
Frame = +1
Query: 37 IPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKK 216
IP HQFGFRK H Q+ RV I + K+ CSA FLD+ +AFDRVWH GLL K+ +
Sbjct: 592 IPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSR 651
Query: 217 YLPHSYFLLLESYLSDRRFQVKL-RDARSSLFACRAGVPQGSVLGPVLYNIFTSDLP--- 384
+P F LLE+YLS+R F V++ + S + RAGVPQGS+LGPVLY+I++SD+P
Sbjct: 652 LIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPI 711
Query: 385 -------------QSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIK 525
I +AT+ADD LS S A L Q L+V W KW I
Sbjct: 712 VKDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIA 771
Query: 526 ASAPKSHHITFTLRRD 573
+A K+ HI F+L+++
Sbjct: 772 INAKKTGHILFSLKKE 787
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 156 bits (378), Expect = 3e-38
Identities = 86/196 (43%), Positives = 114/196 (58%), Gaps = 17/196 (8%)
Frame = +1
Query: 37 IPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKK 216
IP HQFGFRK H Q+ RV I + K+ CSA FLD+ +AFDRVWH GLL K+ +
Sbjct: 592 IPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSR 651
Query: 217 YLPHSYFLLLESYLSDRRFQVKL-RDARSSLFACRAGVPQGSVLGPVLYNIFTSDLP--- 384
+P F LLE+YLS+R F V++ + S + RAGVPQGS+LGPVLY+I++SD+P
Sbjct: 652 LIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPI 711
Query: 385 -------------QSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIK 525
I +AT+ADD LS S A L Q L+V W KW I
Sbjct: 712 VKDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIA 771
Query: 526 ASAPKSHHITFTLRRD 573
+A K+ HI F+L+++
Sbjct: 772 INAKKTGHILFSLKKE 787
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 153 bits (372), Expect = 2e-37
Identities = 74/150 (49%), Positives = 98/150 (65%)
Frame = +1
Query: 4 RLSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRV 183
R+SP L + +P +QF F H IEQV+R+ IR E +EYC+A FLDV QAFDRV
Sbjct: 70 RISPHLKTHNTLPSYQFDFPAKHGAIEQVNRITTEIRTAFEHREYCTALFLDVAQAFDRV 129
Query: 184 WHRGLLCKIKKYLPHSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYN 363
W GL+ KI + LP + LL+SYL R F V+ + SS F AGVPQGSVLGP+LY
Sbjct: 130 WLDGLMFKIIQLLPQNIHKLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSVLGPILYT 189
Query: 364 IFTSDLPQSPEIAVATFADDAAFLSCSSDP 453
++T+D+P + ++ + TFADD A +S S P
Sbjct: 190 LYTADIPTNYQLTIFTFADDTAIISRSRCP 219
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 136 bits (328), Expect = 3e-32
Identities = 72/190 (37%), Positives = 112/190 (58%), Gaps = 1/190 (0%)
Frame = +1
Query: 4 RLSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRV 183
RL LD + +P Q+GFR +TI ++ I+ ++ K+ LD++ AFD V
Sbjct: 558 RLVKFLDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTV 617
Query: 184 WHRGLLCKIKKYLPHSYFL-LLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLY 360
WH GLL K+K Y + +++++L+ R F V L ++S+ AGVPQGSVLGP L+
Sbjct: 618 WHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLF 677
Query: 361 NIFTSDLPQSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPK 540
NIFT D+PQ+ ++ FADDAA S +E ++ +Q+ L+ + + KW+IK + K
Sbjct: 678 NIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNK 737
Query: 541 SHHITFTLRR 570
++ I FT RR
Sbjct: 738 TNAIFFTKRR 747
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 136 bits (328), Expect = 3e-32
Identities = 72/190 (37%), Positives = 112/190 (58%), Gaps = 1/190 (0%)
Frame = +1
Query: 4 RLSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRV 183
RL LD + +P Q+GFR +TI ++ I+ ++ K+ LD++ AFD V
Sbjct: 506 RLVKFLDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTV 565
Query: 184 WHRGLLCKIKKYLPHSYFL-LLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLY 360
WH GLL K+K Y + +++++L+ R F V L ++S+ AGVPQGSVLGP L+
Sbjct: 566 WHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLF 625
Query: 361 NIFTSDLPQSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPK 540
NIFT D+PQ+ ++ FADDAA S +E ++ +Q+ L+ + + KW+IK + K
Sbjct: 626 NIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNK 685
Query: 541 SHHITFTLRR 570
++ I FT RR
Sbjct: 686 TNAIFFTKRR 695
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 79.4 bits (187), Expect = 4e-15
Identities = 45/172 (26%), Positives = 90/172 (52%), Gaps = 5/172 (2%)
Frame = +1
Query: 4 RLSPCLDACHIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRV 183
RL+ + ++I +Q F+ +HST++ + R+ N L K + S D ++AFDRV
Sbjct: 533 RLTWFIKRHNLISHNQVAFKSNHSTMDALLRIQHFASNALSTKNHVSILATDFERAFDRV 592
Query: 184 WHRGLLCKIKKY-LPHSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLY 360
+LC+++++ + + L+++++++R F+V++ + S+ G+PQGS L VL+
Sbjct: 593 GIHAVLCRLERWGIGPRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLF 652
Query: 361 NIFTSDL----PQSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTW 504
I D+ + +I ++ +ADDA + + N L N+W
Sbjct: 653 MIAIEDINDIVTRHKDIYISLYADDAIIFTKIKNINTVREKFLEILQEINSW 704
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 66.9 bits (156), Expect = 2e-11
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 11/185 (5%)
Frame = +1
Query: 49 QFGFRKHHSTIEQVHRVYCTIRNCLE-------RKEYCSAAFLDVQQAFDRVWHRGLLCK 207
Q+GFRK ST++ + V R L+ K+YC+ LDV+ AF+ +L
Sbjct: 514 QYGFRKGKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILGA 573
Query: 208 IKKYLPHSYFL-LLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYNIFTS--- 375
++ Y ++ +Y DR D S AGVPQGSVLGP+L+NI
Sbjct: 574 MRNLGVPDYIRGVIGNYFRDRVLWYVTEDGPRS-HQVSAGVPQGSVLGPILWNIMYDGIL 632
Query: 376 DLPQSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKSHHIT 555
+ + + + FADD A + + E + + WL K +K +A K+ +
Sbjct: 633 SISKPRGVELHCFADDVAITAVAKTIPELQDISNVAITAAIEWLEKVGLKIAAHKTEVVL 692
Query: 556 FTLRR 570
+ R+
Sbjct: 693 LSSRK 697
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 55.6 bits (128), Expect = 6e-08
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 6/203 (2%)
Frame = +1
Query: 31 HIIPDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKI 210
++I D QFGF+K ST + + V I + K + S LD +AFDRV ++ ++
Sbjct: 537 NLINDKQFGFKKGKSTSDCLLYVDYLIT---KSKMHTSLVTLDFSRAFDRVGVHSIIQQL 593
Query: 211 KKYLPHSYFL-LLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVL----YNIFTS 375
+++ + +++++S+R+ V++ SS G+PQGS + +L +N ++
Sbjct: 594 QEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIAFNKLSN 653
Query: 376 DLPQSPEIAVATFADDAAFLSCSSDPNEASRL-LQTQLDVTNTWLTKWRIKASAPKSHHI 552
+ EI +ADD FL + + N + L D W + S K H+
Sbjct: 654 IISLHKEIKFNAYADD-FFLIINFNKNTNTNFNLDNLFDDIENWCSYSGASLSLSKCQHL 712
Query: 553 TFTLRRDTCPPVKLGHDTLPQST 621
+R + + +P T
Sbjct: 713 HICRKRHCTCKISCNNFQIPSVT 735
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 48.8 bits (111), Expect = 7e-06
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 322 GVPQGSVLGPVLYNIFTSDLPQSPEIA---VATFADDAAFLSCSSDPNEASRLLQTQLDV 492
GVPQGSVLGP+L+N + + P + + FADD A L P +A + +
Sbjct: 50 GVPQGSVLGPLLWNTMYDGILRLPLVGRSEIVGFADDVALLVVDKYPGKAEEMCNRNIRA 109
Query: 493 TNTWLTKWRIKASAPKSHHITFTLRR 570
WL+ ++ + K+ + + R+
Sbjct: 110 IEHWLSSMGLELAPEKTKAVLISSRK 135
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 43.2 bits (97), Expect = 3e-04
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Frame = +1
Query: 49 QFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKKYLPH 228
QFGFR+ + V ++ +Y F+D + AFD V L ++ L
Sbjct: 544 QFGFRQGRCVEDAWRHVKSSVG--ASAAQYVLGTFVDFKGAFDNVEWSAALSRLAD-LGC 600
Query: 229 SYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYNIFTSDLPQ--SPEIA 402
L +S+ S RR ++ + R G PQGS+ GP +++I L Q P
Sbjct: 601 REMGLWQSFFSGRRAVIRSSSGTVEVPVTR-GCPQGSISGPFIWDILMDVLLQRLQPYCQ 659
Query: 403 VATFADDAAFL 435
++ +ADD L
Sbjct: 660 LSAYADDLLLL 670
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 35.5 bits (78), Expect = 0.065
Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 6/170 (3%)
Frame = +1
Query: 49 QFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKKY-LP 225
Q GF + V +R+ + C A LDV +AFD + H + ++ Y P
Sbjct: 446 QRGFLPTDGCADNATIVDLVLRHSHKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAP 505
Query: 226 HSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYNI----FTSDLPQSP 393
+ +++ + S F GV QG L P+L+N+ LP
Sbjct: 506 KGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEI 565
Query: 394 EIAVATFADDAAFLSCSSDPNEASRL-LQTQLDVTNTWLTKWRIKASAPK 540
V +AA + +R+ LQ LD T +L+ +K +A K
Sbjct: 566 GAKVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLDFLSIVGLKLNADK 615
>AE014297-4087|AAF56679.2| 404|Drosophila melanogaster CG31063-PA
protein.
Length = 404
Score = 29.5 bits (63), Expect = 4.3
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 555 CDVVRLGGASFNAPLGQPSVSDIELGLQQSGRFIRITATTEEG--CIIGKGC 406
C+V S +G+ + +E+ L++S + ++ ATT G C++G C
Sbjct: 141 CEVCDAQKVSAGGGIGEERIQVLEMSLEESRQLVQTGATTNGGPSCLLGLLC 192
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,009,898
Number of Sequences: 53049
Number of extensions: 721418
Number of successful extensions: 2246
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2215
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2848092300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -