Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1139
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 79 4e-15
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 69 3e-12
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 58 7e-09
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 48 4e-06
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 36 0.034
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 36 0.034
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 36 0.034
Z82279-1|CAB05259.2| 321|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 27 9.0
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 27 9.0
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 27 9.0
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 78.6 bits (185), Expect = 4e-15
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Frame = +1
Query: 121 LERKEYCSAAFLDVQQAFDRVWHRGLLCKIKKYLPHSYFLL-LESYLSDRRFQVKLRDAR 297
++ E +LD +AFDR+ H LL K+ + L+ + +LS+R F+V++
Sbjct: 8 IDHGEQIDIIYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTL 67
Query: 298 SSLFACRAGVPQGSVLGPVLYNIFTSDLPQ-SPE-IAVATFADDAAFLSCSSDPNEASRL 471
SS GVPQG+VL P+L+ I+ +D+ PE +A FADD L S+ E+
Sbjct: 68 SSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTK-LYASTPKTESENN 126
Query: 472 LQTQLDVTNTWLTKWRIKASAPKSHHITFTLRR 570
LQ+ LD W ++ + K+ H+T RR
Sbjct: 127 LQSALDAVVDWTKGSKLTLNQSKTVHVTVGKRR 159
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 68.9 bits (161), Expect = 3e-12
Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 5/179 (2%)
Frame = +1
Query: 40 PDHQFGFRKHHSTIEQVHRVYCTIRNCLERK---EYCSAAFLDVQQAFDRVWHRGLLCKI 210
P HQ GF+ HST V +V I L K E A LD++ AFD+V + L +
Sbjct: 433 PAHQHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDL 492
Query: 211 KKY--LPHSYFLLLESYLSDRRFQVKLRDARSSLFACRAGVPQGSVLGPVLYNIFTSDLP 384
+ + L L +YL R + + S GVPQGSV+ P L+ + D+P
Sbjct: 493 MEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMP 552
Query: 385 QSPEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTWLTKWRIKASAPKSHHITFT 561
+ + ++ADD + ++ +A+ +Q +D +L + + SA KS F+
Sbjct: 553 TQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTVFS 611
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 57.6 bits (133), Expect = 7e-09
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Frame = +1
Query: 166 QAFDRVWHRGLLCKIKKYLPHSYFL-LLESYLSDRRFQVKLRD-ARSSLFACRAGVPQGS 339
+AFD+V H LL K+ + + F +LS R F VK+ + ++ +GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 340 VLGPVLYNIFTSDLPQS--PEIAVATFADDAAFLSCSSDPNEASRLLQTQLDVTNTW 504
V GP L+ IF + L S P I+ + FADD S S P L+QT +D+ TW
Sbjct: 62 VSGPFLFLIFINSLLLSVPPSISCSAFADDLKVYS-HSPP-----LIQTTIDLITTW 112
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 48.4 bits (110), Expect = 4e-06
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Frame = +1
Query: 247 ESYLSDRRFQVKLRDARS-SLFACRAGVPQGSVLGPVLYNIFTSDL--PQSPEIAVATFA 417
+ +L +R F VK+ S + + +GVPQGSV GP+L+ +F ++L +P I ++ FA
Sbjct: 854 KEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINNLLIDLAPTINISCFA 913
Query: 418 DDAAFLSCSSDPNEASRLLQTQLDVTNTW 504
DD +DP ++Q +D+ +W
Sbjct: 914 DDVKIF--HTDPT----IIQNSIDIIVSW 936
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 40 PDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGL 198
P Q GFR+ STI+ +H + + E + + F+D ++AFD V H+ +
Sbjct: 482 PVEQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDTVEHQAI 534
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 40 PDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGL 198
P Q GFR+ STI+ +H + + E + + F+D ++AFD V H+ +
Sbjct: 653 PVEQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAI 705
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 40 PDHQFGFRKHHSTIEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGL 198
P Q GFR+ STI+ +H + + E + + F+D ++AFD V H+ +
Sbjct: 392 PVEQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAI 444
>Z82279-1|CAB05259.2| 321|Caenorhabditis elegans Hypothetical
protein R03C1.1 protein.
Length = 321
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 187 AKPDQKLVVRREKQQNSTLSSPNNFLLYNTLCVPVLWLSGASGSQIGGQVLY 32
A PD+ ++VR ++QQ + +PN L + P + S S IG V Y
Sbjct: 22 AAPDEPIIVRSKRQQCRCVKNPNGGLTCSCAKGP----ADGSSSSIGSGVQY 69
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 73 STIEQVHRVYCTIRNCLERKEYCSAA 150
STI+++H+V C RK++CS +
Sbjct: 1511 STIKEMHKVGQVHEGCKHRKDFCSTS 1536
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 73 STIEQVHRVYCTIRNCLERKEYCSAA 150
STI+++H+V C RK++CS +
Sbjct: 1511 STIKEMHKVGQVHEGCKHRKDFCSTS 1536
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 282 AP*CQ--IFSLCLQSRSAPRLRTWSGPLQHFY*RFTPVTRNSCSNLCR*CSLPQ 437
AP CQ S CLQ +AP+ + Q +F PV C++LC S PQ
Sbjct: 363 APVCQQQCASQCLQP-AAPQCQQCQNTCQ----QFAPVCEQQCASLCHQPSAPQ 411
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 73 STIEQVHRVYCTIRNCLERKEYCSAA 150
STI+++H+V C RK++CS +
Sbjct: 1511 STIKEMHKVGQVHEGCKHRKDFCSTS 1536
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,724,295
Number of Sequences: 27780
Number of extensions: 364508
Number of successful extensions: 1025
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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