Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1139
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.49 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.6  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   7.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 203 AKLKSTFHIPTFCC*SLISVTEGFKSSSVMPDLLSLPAEPECPKAPYLVRSSTTFLLAIY 382
           AKL++  H  +FC    + V   F SS    D +SLP +    K   +V    + L+   
Sbjct: 213 AKLRNV-HSSSFCIPLPVRVLPNFPSSGHWQDQMSLP-QMLADKIGKMVNQKFSELIQSK 270

Query: 383 PSHQK 397
           P H +
Sbjct: 271 PQHAR 275


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 620 PCVKYLGIPLGPKD 661
           PC++Y  +P+ P+D
Sbjct: 84  PCLQYTQLPVNPRD 97


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 620 PCVKYLGIPLGPKD 661
           PC++Y  +P+ P+D
Sbjct: 84  PCLQYTQLPVNPRD 97


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +1

Query: 79  IEQVHRVYCTIRNCLERKEYCSAAFLDVQQAFDRVWHRGLLCKIKK 216
           + ++ R +   R   ER+    +  L + +A  ++W +    KIKK
Sbjct: 32  LARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIKK 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,654
Number of Sequences: 438
Number of extensions: 4375
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)