Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1135
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   0.22 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   0.22 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.7  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   2.7  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   2.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 559 QWISLSGPSHANIESSGR*HSAQLKHFLC 473
           Q + LS     N+E S   H+ QL+ +LC
Sbjct: 308 QCLDLSKTKETNLEKSNLNHNEQLRKYLC 336


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 559 QWISLSGPSHANIESSGR*HSAQLKHFLC 473
           Q + LS     N+E S   H+ QL+ +LC
Sbjct: 200 QCLDLSKTKETNLEKSNLNHNEQLRKYLC 228


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 384 WSYPGCRKDG*QIS 343
           W YPG  K G Q+S
Sbjct: 297 WEYPGAEKMGGQLS 310


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 78  IKAPPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCR 188
           ++ P G    +     + + Q++   RE+HR  + CR
Sbjct: 76  MERPKGASNGKRARTAYTSSQLVELEREFHRSKYLCR 112


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 78  IKAPPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCR 188
           ++ P G    +     + + Q++   RE+HR  + CR
Sbjct: 96  MERPKGASNGKRARTAYTSSQLVELEREFHRSKYLCR 132


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 183  CRDCTKTLDSIIACDGPDGEVYCKTCY 263
            C D   T DSI+ C   D     K  Y
Sbjct: 1043 CNDAVMTSDSIMKCAFCDTPFISKGAY 1069


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,386
Number of Sequences: 336
Number of extensions: 3200
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)