Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1135
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15) 96 2e-20
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14) 60 1e-09
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 57 1e-08
SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 54 9e-08
SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08) 52 5e-07
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43) 52 5e-07
SB_59654| Best HMM Match : LIM (HMM E-Value=0.0026) 50 1e-06
SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 46 2e-05
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34) 42 4e-04
SB_13716| Best HMM Match : LIM (HMM E-Value=0) 42 4e-04
SB_15482| Best HMM Match : LIM (HMM E-Value=0) 41 0.001
SB_40829| Best HMM Match : LIM (HMM E-Value=1.7e-14) 38 0.005
SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24) 38 0.008
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40) 38 0.008
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 37 0.011
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) 36 0.019
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.034
SB_40925| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059
SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26) 34 0.078
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_24315| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_53354| Best HMM Match : zf-CCHC (HMM E-Value=0.72) 30 1.3
SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35) 30 1.3
SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013) 29 2.9
SB_20996| Best HMM Match : LIM (HMM E-Value=9e-22) 29 2.9
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 29 3.9
SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10) 28 5.1
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.8
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91) 28 6.8
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.8
SB_55909| Best HMM Match : Sushi (HMM E-Value=2.3e-31) 28 6.8
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15)
Length = 85
Score = 95.9 bits (228), Expect = 2e-20
Identities = 39/76 (51%), Positives = 50/76 (65%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKWGP 281
CPRC V+ AE+ LA G++WH+ C C+ C K+LDS D DGE+YCK CYGK +GP
Sbjct: 10 CPRCSKTVYKAEERLAIGKKWHKSCLTCKCCNKSLDSTNLAD-KDGEIYCKGCYGKNFGP 68
Query: 282 HGYGFACGSGFLQTDG 329
GYG+ G+G L G
Sbjct: 69 KGYGYGGGAGALTNTG 84
Score = 85.0 bits (201), Expect = 4e-17
Identities = 35/66 (53%), Positives = 43/66 (65%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 590
CPRC V+ AE++LA G WHK C C C++ LDS D D EI+C+ CY K FGP
Sbjct: 10 CPRCSKTVYKAEERLAIGKKWHKSCLTCKCCNKSLDSTNLAD-KDGEIYCKGCYGKNFGP 68
Query: 591 KGFGYG 608
KG+GYG
Sbjct: 69 KGYGYG 74
>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
Length = 446
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/67 (43%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +3
Query: 372 PDTTSIKAPKGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLAC---DGP 542
PD T P CPRC +AAEQ L G WHK CFNC +CH+ LDS D
Sbjct: 207 PDNTCRCKP--DPCPRCEKRAYAAEQVLGAGFNWHKSCFNCYKCHKKLDSTTVAVHKDAR 264
Query: 543 DKEIHCR 563
+ ++H R
Sbjct: 265 NADLHTR 271
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVY 248
CPRCG V+ AE+V + ++H+KCF C+DC K LDS A DG+ +
Sbjct: 44 CPRCGDNVYHAEEVSMENHKFHKKCFSCKDCRKKLDSTNAA-SHDGKCH 91
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/37 (56%), Positives = 23/37 (62%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDS 212
CPRC +AAEQVL G WH+ CF C C K LDS
Sbjct: 218 CPRCEKRAYAAEQVLGAGFNWHKSCFNCYKCHKKLDS 254
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDK 548
CPRCG V+ AE+ + +HKKCF+C +C + LDS A K
Sbjct: 44 CPRCGDNVYHAEEVSMENHKFHKKCFSCKDCRKKLDSTNAASHDGK 89
Score = 48.0 bits (109), Expect = 6e-06
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = +3
Query: 357 RPFYNPDTTSIKAPKG--QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAE--CHRPLDSM 524
R YN D + +G C RC M + AE G WHK CF CAE C + L+S
Sbjct: 277 RRAYNADLPTRTMSEGAPMRCGRCDKMCYHAEGISMAGKRWHKSCFACAEVRCRKKLEST 336
Query: 525 LACDG---PDK 548
C+G PDK
Sbjct: 337 NCCEGNGIPDK 347
Score = 44.4 bits (100), Expect = 7e-05
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRD--CTKTLDSIIACDG 230
C RC + + AE + G+ WH+ CF C + C K L+S C+G
Sbjct: 297 CGRCDKMCYHAEGISMAGKRWHKSCFACAEVRCRKKLESTNCCEG 341
Score = 31.5 bits (68), Expect = 0.55
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 252 KTCYGKKWGPHGYGFACGSGFLQTDG 329
+ CY K +G GYG+ G+G L+ G
Sbjct: 420 RACYAKNYGALGYGYGVGAGALKLTG 445
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 561 RACYAKLFGPKGFGYG 608
RACYAK +G G+GYG
Sbjct: 420 RACYAKNYGALGYGYG 435
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 56.8 bits (131), Expect = 1e-08
Identities = 47/168 (27%), Positives = 66/168 (39%), Gaps = 7/168 (4%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGRE-----WHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYG 266
C RC G V + L R WH KCF C + + L +I C D E+YC +G
Sbjct: 80 CKRCNGPVNPGDMALFAERLGPDSCWHVKCFTCEEDGELLVDLIYC-SKDDEIYCCRHWG 138
Query: 267 KKWGPHGYGF-ACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAA 443
+K P G GF D E+ I NP C C G
Sbjct: 139 EKLKPRCAGCEEMNEGFTLKD---EKLICHGCRGINPSKV---------CAACNGDFAPG 186
Query: 444 EQQLA-KGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 584
E+++ + +H KCF C EC +P+ S ++ + C C+ F
Sbjct: 187 EKKVGYQSKTFHDKCFICDECKQPIGSKQFIRRDERRL-CNNCFDSKF 233
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +3
Query: 411 CPRCGGMVFAAE-----QQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYA 575
C RC G V + ++L + WH KCF C E L ++ C D EI+C +
Sbjct: 80 CKRCNGPVNPGDMALFAERLGPDSCWHVKCFTCEEDGELLVDLIYC-SKDDEIYCCRHWG 138
Query: 576 KLFGPKGFG 602
+ P+ G
Sbjct: 139 EKLKPRCAG 147
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 590
C +C ++ + Q A G+ +H +CF C C +PL + + C+ CY + +
Sbjct: 237 CVKCNQVIKTSSVQHA-GSTYHSECFTCHHCDKPLAGSPFTKQEGRNV-CQNCYRERYAK 294
Query: 591 K 593
+
Sbjct: 295 R 295
Score = 34.7 bits (76), Expect = 0.059
Identities = 26/102 (25%), Positives = 39/102 (38%)
Frame = +3
Query: 96 KGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKW 275
K C +C V+ V G +H +CF C C K L +G C+ CY ++
Sbjct: 235 KVCVKCNQVI-KTSSVQHAGSTYHSECFTCHHCDKPLAG-SPFTKQEGRNVCQNCYRER- 291
Query: 276 GPHGYGFACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAPK 401
Y CG+ +G T+ + F+ T K K
Sbjct: 292 ----YAKRCGACHNLIEGNTKFVAYDEKYFHRECFTCCKCNK 329
Score = 32.7 bits (71), Expect = 0.24
Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 19/161 (11%)
Frame = +3
Query: 90 PGKGCPRCGGVVFAAEQVLA-KGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYG 266
P K C C G E+ + + + +H KCF C +C + + S + + C C+
Sbjct: 172 PSKVCAACNGDFAPGEKKVGYQSKTFHDKCFICDECKQPIGSKQFIRRDERRL-CNNCFD 230
Query: 267 KKWGPHGY--GFACGSGFLQTDGLTE----------EEISASRPFYNPDTTSI-----KA 395
K+ + +Q G T ++ A PF + ++ +
Sbjct: 231 SKFAKVCVKCNQVIKTSSVQHAGSTYHSECFTCHHCDKPLAGSPFTKQEGRNVCQNCYRE 290
Query: 396 PKGQGCPRCGGMVFAAEQQLAKGTMW-HKKCFNCAECHRPL 515
+ C C ++ + +A + H++CF C +C++PL
Sbjct: 291 RYAKRCGACHNLIEGNTKFVAYDEKYFHRECFTCCKCNKPL 331
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 96 KGCPRCGGVVFAAEQVLAKGREW-HRKCFKCRDCTKTLDSIIACDGPDGEVYCKTC 260
K C C ++ + +A ++ HR+CF C C K L DGE C C
Sbjct: 294 KRCGACHNLIEGNTKFVAYDEKYFHRECFTCCKCNKPLAG-EKFRIRDGEKICLPC 348
>SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42)
Length = 328
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/78 (32%), Positives = 36/78 (46%)
Frame = +3
Query: 45 APKTTVIDTASIKAPPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIAC 224
+P +D S + G+ C C + V GR WH KC KC C+ L C
Sbjct: 86 SPSLNAVDHVSTQ---GERCVGCEAKIVDRYLVKVSGRAWHTKCLKCCLCSDELGREATC 142
Query: 225 DGPDGEVYCKTCYGKKWG 278
DG++YCK Y +++G
Sbjct: 143 YTKDGKIYCKADYARQFG 160
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = +3
Query: 399 KGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAK 578
+G+ C C + G WH KC C C L C D +I+C+A YA+
Sbjct: 98 QGERCVGCEAKIVDRYLVKVSGRAWHTKCLKCCLCSDELGREATCYTKDGKIYCKADYAR 157
Query: 579 LFGPK 593
FG K
Sbjct: 158 QFGTK 162
Score = 34.3 bits (75), Expect = 0.078
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 402 GQGCPRCGGMVFAAEQ-QLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACY 572
G C RCG + A + + AK ++H CF C C R L + D + C+ Y
Sbjct: 160 GTKCARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFALKDGHVLCKLHY 217
>SB_57743| Best HMM Match : LIM (HMM E-Value=1.7e-08)
Length = 197
Score = 51.6 bits (118), Expect = 5e-07
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDS 212
CPRC V+ AEQ A G+ WH+ C C+ C K LDS
Sbjct: 5 CPRCEKPVYFAEQAKANGKSWHKPCLTCKHCNKRLDS 41
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDS 521
CPRC V+ AEQ A G WHK C C C++ LDS
Sbjct: 5 CPRCEKPVYFAEQAKANGKSWHKPCLTCKHCNKRLDS 41
>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
Length = 511
Score = 51.6 bits (118), Expect = 5e-07
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKW 275
C CG + ++A +EWH C KC DC LD+ + C DG + C+ Y +++
Sbjct: 248 CAGCGSRILERFYLMAVDQEWHADCLKCSDCELRLDNELTCFSKDGVILCREDYYRRF 305
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 590
C CG + +A WH C C++C LD+ L C D I CR Y + F
Sbjct: 248 CAGCGSRILERFYLMAVDQEWHADCLKCSDCELRLDNELTCFSKDGVILCREDYYRRFSV 307
Query: 591 K 593
K
Sbjct: 308 K 308
>SB_59654| Best HMM Match : LIM (HMM E-Value=0.0026)
Length = 56
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +3
Query: 384 SIKAPKGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACD 536
S K G CP+C V++AE Q G +HK+CF C C++ LDS D
Sbjct: 3 SSKYGGGPKCPKCDKTVYSAEGQALLGMTFHKRCFTCTTCNKSLDSTTVAD 53
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +3
Query: 75 SIKAPPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACD 227
S K G CP+C V++AE G +H++CF C C K+LDS D
Sbjct: 3 SSKYGGGPKCPKCDKTVYSAEGQALLGMTFHKRCFTCTTCNKSLDSTTVAD 53
>SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +3
Query: 378 TTSIKAPKGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIH 557
TT + +P C CG + ++ LA WH CF+C +CH L L G D + +
Sbjct: 78 TTKVSSPYLHTCAGCGEAIKGSQALLALEKQWHLWCFSCTKCHCLLS--LEYMGMDGKPY 135
Query: 558 CRACYAKLFG 587
C Y +LFG
Sbjct: 136 CEKDYQELFG 145
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +3
Query: 39 DQAPKTTVIDTASIKAPPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSII 218
+ APK T + +P C CG + ++ +LA ++WH CF C C L +
Sbjct: 71 NNAPKAP---TTKVSSPYLHTCAGCGEAIKGSQALLALEKQWHLWCFSCTKCHCLLS--L 125
Query: 219 ACDGPDGEVYCKTCYGKKWG 278
G DG+ YC+ Y + +G
Sbjct: 126 EYMGMDGKPYCEKDYQELFG 145
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 48.0 bits (109), Expect = 6e-06
Identities = 49/167 (29%), Positives = 64/167 (38%), Gaps = 24/167 (14%)
Frame = +3
Query: 156 REWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKWGPHGYGFACGSGFLQTDGLT 335
R WH KCF C C + L S ++ C CY + FACG + G +
Sbjct: 359 RHWHDKCFICDICRRPLKSDGKFTFYRDQILCNNCYVANYQKEC--FACGQ--MIDSGAS 414
Query: 336 EEEISASRPFYNPDT-----------TSIKAPKGQG--CPRCGGMVFA------AEQQLA 458
E S + F++ + TS PK CP C F+ E L
Sbjct: 415 RLEYSGN--FWHENCFRCANCGEAIGTSGFVPKDDTFFCPGCYQSKFSKRCASCGEPLLE 472
Query: 459 KGTM-----WHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 584
G + WHK CF+C CHR L S A D +C CY K +
Sbjct: 473 GGVLYNGETWHKACFSCYFCHRSLAS-AAFSVRDGCRYCMECYGKFY 518
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/58 (41%), Positives = 28/58 (48%)
Frame = +3
Query: 96 KGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGK 269
K C CG + VL G WH+ CF C C ++L S A DG YC CYGK
Sbjct: 461 KRCASCGEPLLEGG-VLYNGETWHKACFSCYFCHRSLAS-AAFSVRDGCRYCMECYGK 516
Score = 43.6 bits (98), Expect = 1e-04
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 20/162 (12%)
Frame = +3
Query: 96 KGCPRCGGVVFA-AEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKK 272
K C CG ++ + A ++ G WH CF+C +C + + + D +C CY K
Sbjct: 400 KECFACGQMIDSGASRLEYSGNFWHENCFRCANCGEAIGT-SGFVPKDDTFFCPGCYQSK 458
Query: 273 WGPHGYGFACGSGFLQ----TDGLTEEEISASRPFYNPDTTSIKAPKGQG---CPRCGGM 431
+ +CG L+ +G T + S F + S G C C G
Sbjct: 459 FSKR--CASCGEPLLEGGVLYNGETWHKACFSCYFCHRSLASAAFSVRDGCRYCMECYGK 516
Query: 432 VFAAEQQLA------------KGTMWHKKCFNCAECHRPLDS 521
+A + ++ + + +HK+CF C+ C R L S
Sbjct: 517 FYAKQCEICLKAIVGGEYYTLEESNFHKECFMCSRCGRSLAS 558
Score = 40.7 bits (91), Expect = 0.001
Identities = 42/181 (23%), Positives = 65/181 (35%), Gaps = 23/181 (12%)
Frame = +3
Query: 120 VVFAAEQVLAKGREWHRKCFKCRDCTKTLDS---IIACDGP-------DGEVY-CKTCYG 266
++F E +A + WH F+C+ C ++ I+ D P D + C+ C+
Sbjct: 285 LIFTGEYTVAMNKNWHLGHFQCQTCDHSITGRQFIVRGDKPVCTDCFKDSYAHECEACH- 343
Query: 267 KKWGPHGYGFACGSGFLQTDGLTEEEISASRP--------FYNPD---TTSIKAPKGQGC 413
+K GP + D +I RP FY A + C
Sbjct: 344 QKIGPESRDISSDDDRHWHDKCFICDI-CRRPLKSDGKFTFYRDQILCNNCYVANYQKEC 402
Query: 414 PRCGGMVFAAEQQLA-KGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 590
CG M+ + +L G WH+ CF CA C + + D C CY F
Sbjct: 403 FACGQMIDSGASRLEYSGNFWHENCFRCANCGEAIGTS-GFVPKDDTFFCPGCYQSKFSK 461
Query: 591 K 593
+
Sbjct: 462 R 462
Score = 35.1 bits (77), Expect = 0.045
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 471 WHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPKGFGYG 608
WH KCF C C RPL S +I C CY + + F G
Sbjct: 361 WHDKCFICDICRRPLKSDGKFTFYRDQILCNNCYVANYQKECFACG 406
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/58 (41%), Positives = 28/58 (48%)
Frame = +3
Query: 96 KGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGK 269
K C CG + VL G WH+ CF C C ++L S A DG YC CYGK
Sbjct: 49 KRCASCGEPLLEGG-VLYNGETWHKACFSCYFCHRSLAS-AAFSVRDGCRYCMECYGK 104
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/58 (37%), Positives = 26/58 (44%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 584
C CG + L G WHK CF+C CHR L S A D +C CY K +
Sbjct: 51 CASCGEPLLEGGV-LYNGETWHKACFSCYFCHRSLAS-AAFSVRDGCRYCMECYGKFY 106
Score = 38.7 bits (86), Expect = 0.004
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 19/142 (13%)
Frame = +3
Query: 153 GREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKWGPHGYGFACGSGFLQ---- 320
G WH CF+C +C + + + D +C CY K+ +CG L+
Sbjct: 8 GNFWHENCFRCANCGEAIGT-SGFVPKDDTFFCPGCYQSKFSKR--CASCGEPLLEGGVL 64
Query: 321 TDGLTEEEISASRPFYNPDTTSIKAPKGQG---CPRCGGMVFAAEQQLA----------- 458
+G T + S F + S G C C G +A + ++
Sbjct: 65 YNGETWHKACFSCYFCHRSLASAAFSVRDGCRYCMECYGKFYAKQCEICLKAIVGGEYYT 124
Query: 459 -KGTMWHKKCFNCAECHRPLDS 521
+ + +HK+CF C+ C R L S
Sbjct: 125 LEESNFHKECFMCSRCGRSLAS 146
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = +3
Query: 462 GTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPK 593
G WH+ CF CA C + + D C CY F +
Sbjct: 8 GNFWHENCFRCANCGEAIGTS-GFVPKDDTFFCPGCYQSKFSKR 50
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 96 KGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDS 212
K C C + E + +H++CF C C ++L S
Sbjct: 108 KQCEICLKAIVGGEYYTLEESNFHKECFMCSRCGRSLAS 146
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +3
Query: 39 DQAPKTTVIDTASIKAPPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSII 218
++ P+ T+ G C CG V+ E+++A+ R +HR CF+C C +L +
Sbjct: 590 EEKPEDTIAPMMQCMPSLGTACLICGERVYLMERLVAERRLFHRACFRCSRCNSSLRAGT 649
Query: 219 ACDGPDGEVYC 251
P+ E +C
Sbjct: 650 YTFFPESESFC 660
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 402 GQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHC 560
G C CG V+ E+ +A+ ++H+ CF C+ C+ L + P+ E C
Sbjct: 608 GTACLICGERVYLMERLVAERRLFHRACFRCSRCNSSLRAGTYTFFPESESFC 660
>SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34)
Length = 621
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKWGP 281
C C ++F+ A+ R WH++ F C +C + L + G+ +C CY K +
Sbjct: 374 CAACDELIFSETYTQAEDRNWHQRHFCCLECDRDLGGQLYV-ARGGQPHCLECYDKYYAK 432
Query: 282 H 284
H
Sbjct: 433 H 433
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 584
C C ++F+ A+ WH++ F C EC R L L + HC CY K +
Sbjct: 374 CAACDELIFSETYTQAEDRNWHQRHFCCLECDRDLGGQLYV-ARGGQPHCLECYDKYY 430
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGRE-----WHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYG 266
C RC V E + R WH CF C C L +I DG +YC Y
Sbjct: 309 CFRCSKPVMTGEVAVFASRAGEDKCWHPGCFVCTVCNNLLVDLIYF-YKDGVIYCGRHYA 367
Query: 267 KKWGP 281
+++ P
Sbjct: 368 EQFKP 372
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = +3
Query: 411 CPRCGGMVFAAE-----QQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYA 575
C RC V E + + WH CF C C+ L ++ D I+C YA
Sbjct: 309 CFRCSKPVMTGEVAVFASRAGEDKCWHPGCFVCTVCNNLLVDLIYF-YKDGVIYCGRHYA 367
Query: 576 KLFGPK 593
+ F P+
Sbjct: 368 EQFKPR 373
>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
Length = 401
Score = 41.9 bits (94), Expect = 4e-04
Identities = 34/125 (27%), Positives = 46/125 (36%)
Frame = +3
Query: 219 ACDGPDGEVYCKTCYGKKWGPHGYGFACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAP 398
AC+ P C T GK W P + L T E + +P+ D AP
Sbjct: 284 ACNKPIIGQVC-TALGKTWHPEHFACVACEAPLGTQNFFERD---GKPYCERDYHDTFAP 339
Query: 399 KGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAK 578
+ C C G + + T WH + F CAEC P D + CR Y
Sbjct: 340 R---CAYCNGPILDSCVTALDQT-WHPEHFVCAECGNPFGD-TGFHERDGKPFCREDYYA 394
Query: 579 LFGPK 593
+F P+
Sbjct: 395 MFAPR 399
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKWGP 281
C C + + A G+ WH + F C C L + + DG+ YC+ Y + P
Sbjct: 282 CAACNKPIIG-QVCTALGKTWHPEHFACVACEAPLGTQNFFE-RDGKPYCERDYHDTFAP 339
>SB_15482| Best HMM Match : LIM (HMM E-Value=0)
Length = 349
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 471 WHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPKGFG 602
WH+ C C C L +C D++++CR Y K+FG K G
Sbjct: 66 WHESCLQCCICRSQLSR--SCFSKDRKLYCRTDYEKVFGTKCSG 107
Score = 34.3 bits (75), Expect = 0.078
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 402 GQGCPRCGGMVFAAEQQL-AKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAK 578
G C C + A E + A G ++H CF C C L+ D +++C+A +AK
Sbjct: 102 GTKCSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALKDNKLYCKADFAK 161
Query: 579 L 581
L
Sbjct: 162 L 162
>SB_40829| Best HMM Match : LIM (HMM E-Value=1.7e-14)
Length = 82
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKW 275
C CG E A G+ +H CF+C C + L + G E+YCK Y K+
Sbjct: 11 CATCGEPCIKTEYKYAIGKRFHNACFRCVVCEERLSTDFYARG--SELYCKKDYLSKF 66
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 584
C CG E + A G +H CF C C L + G E++C+ Y F
Sbjct: 11 CATCGEPCIKTEYKYAIGKRFHNACFRCVVCEERLSTDFYARG--SELYCKKDYLSKF 66
>SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24)
Length = 251
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGRE-----WHRKCFKCRDCTKTLDSIIACDGPDGEVYC 251
C RC G V + L R WH KCF C + + L +I C D E+YC
Sbjct: 193 CKRCNGPVNPGDMALFAERLGPDSCWHVKCFTCEEDGELLVDLIYC-SKDAEIYC 246
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +3
Query: 411 CPRCGGMVFAAE-----QQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHC 560
C RC G V + ++L + WH KCF C E L ++ C D EI+C
Sbjct: 193 CKRCNGPVNPGDMALFAERLGPDSCWHVKCFTCEEDGELLVDLIYC-SKDAEIYC 246
>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
Length = 434
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 162 WHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKWGPHGYGFACGSGFLQTD 326
WH +C +C DC L C +G+++CKT + +++G G C G D
Sbjct: 25 WHAQCVQCSDCKCPLTE--RCFSREGKLFCKTDFYRRYGTKCSG--CDQGISPND 75
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 468 MWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPKGFG 602
+WH +C C++C PL C + ++ C+ + + +G K G
Sbjct: 24 VWHAQCVQCSDCKCPLTE--RCFSREGKLFCKTDFYRRYGTKCSG 66
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 584
C C ++FA + A+ + WH + F C EC PL M D + +C C+ L+
Sbjct: 143 CAACDEIIFAEQCTEAEDSCWHVQHFCCFECDCPLGGMRYV-MRDNKPYCCHCFESLY 199
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 399 KGQGCPRCGGMVFAAEQQL-----AKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCR 563
+G C CG V A + + T WH CF C C L ++ D +++C
Sbjct: 74 EGYSCKECGECVTAGSMAVYASRAGQHTCWHASCFICTTCKELLVDLIYF-YKDSKVYCG 132
Query: 564 ACYAKLFGPK 593
+A+ P+
Sbjct: 133 RHHAETLKPR 142
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Frame = +3
Query: 93 GKGCPRCGGVVFAAEQVLAKGRE-----WHRKCFKCRDCTKTLDSIIACDGPDGEVYC 251
G C CG V A + R WH CF C C + L +I D +VYC
Sbjct: 75 GYSCKECGECVTAGSMAVYASRAGQHTCWHASCFICTTCKELLVDLIYF-YKDSKVYC 131
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCY 263
C C ++FA + A+ WH + F C +C L + D + YC C+
Sbjct: 143 CAACDEIIFAEQCTEAEDSCWHVQHFCCFECDCPLGG-MRYVMRDNKPYCCHCF 195
>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 587
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHR 509
CP CG +V + ++QLAK + H K F C +CH+
Sbjct: 92 CPTCG-IVCSDKKQLAKHSKTHLKTFTCKKCHQ 123
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDC 194
CP CG +V + ++ LAK + H K F C+ C
Sbjct: 92 CPTCG-IVCSDKKQLAKHSKTHLKTFTCKKC 121
>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPD-GEVYCKTCY 263
C CG V E+V + +H+ CF C C L+ C PD + YC Y
Sbjct: 245 CDSCGKSVDILERVAVENHVFHKACFVCAICNVWLNHFNYCFVPDHDKFYCVQHY 299
Score = 35.1 bits (77), Expect = 0.045
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKE-IHCRACYAKL-F 584
C CG V E+ + ++HK CF CA C+ L+ C PD + +C Y +
Sbjct: 245 CDSCGKSVDILERVAVENHVFHKACFVCAICNVWLNHFNYCFVPDHDKFYCVQHYQDIEN 304
Query: 585 GPKGFGYG 608
+G G G
Sbjct: 305 ATEGLGSG 312
>SB_40925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 30
Score = 34.7 bits (76), Expect = 0.059
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 150 KGREWHRKCFKCRDCTKTLDS 212
+ ++H+KCF C+DC K LDS
Sbjct: 2 ENHKFHKKCFSCKDCRKKLDS 22
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 471 WHKKCFNCAECHRPLDS 521
+HKKCF+C +C + LDS
Sbjct: 6 FHKKCFSCKDCRKKLDS 22
>SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26)
Length = 481
Score = 34.3 bits (75), Expect = 0.078
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 402 GQGCPRCGGMVFAAEQQL-AKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAK 578
G C C + A E + A G ++H CF C C L+ D +++C+A +AK
Sbjct: 4 GTKCSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALKDNKLYCKADFAK 63
Query: 579 L 581
L
Sbjct: 64 L 64
>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 369 NPDTTSIKAPKGQG-CPRCGGMVFAAEQQL-AKGTMWHKKCFNCAECHRPL 515
N TT+ K G C C ++ A E + G ++H CF C CH L
Sbjct: 693 NGRTTTYKLYGNSGACAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQL 743
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 441 AEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAK 578
A+ +WHK CF C C L +M G K +C A Y K
Sbjct: 203 AQPPARPAAVWHKGCFKCESCGMTL-NMKTYKGYQKLPYCDAHYPK 247
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 162 WHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGK 269
WH+ CFKC C TL ++ G YC Y K
Sbjct: 213 WHKGCFKCESCGMTL-NMKTYKGYQKLPYCDAHYPK 247
>SB_24315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 126 FAAEQVLAKGREWHRKCFKCRDCT 197
+ AEQ+L + WHRKC C+D T
Sbjct: 59 YTAEQLLTEHASWHRKC--CQDAT 80
>SB_53354| Best HMM Match : zf-CCHC (HMM E-Value=0.72)
Length = 298
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 192 CTKTLDSIIACDGPDGEVYCKTCY 263
C ++++ C G D ++YCK CY
Sbjct: 250 CICNANAVLRCHGCDDDLYCKRCY 273
>SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35)
Length = 160
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVL-AKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYC 251
C C + A E V+ A+ +H +CF C+ C K L A D +V C
Sbjct: 81 CSHCNKPIAAFELVMRARNNAYHIECFGCQRCRKRLVVGEAFCFHDNKVLC 131
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSI-IACDGPDGEVYCKTCYGKKWG 278
C C + + A G WH C KC C L I + + CK Y + +G
Sbjct: 17 CRSCNEPISDKYVLQALGSYWHEGCLKCECCDSRLGDIGSSLYSKANLILCKRDYLRLFG 76
Query: 279 PHGYGFAC 302
G C
Sbjct: 77 IPGVCSHC 84
>SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)
Length = 185
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 359 SFLQPGYDQ-HQGSEGP-RLSALWWDGLCCRAAVGQGHYVAQ 478
SF P + Q H S G R S+ WW CCR +G V +
Sbjct: 19 SFPSPVFAQPHYASRGSLRSSSCWWPPFCCRPVHFRGKTVVK 60
>SB_20996| Best HMM Match : LIM (HMM E-Value=9e-22)
Length = 81
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 471 WHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFG 587
+H + F CA C + L+ + DK +C C+ KLFG
Sbjct: 44 FHPEHFVCAFCLKQLNKGTFKEQNDKP-YCHPCFVKLFG 81
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Frame = +3
Query: 471 WHKKCFNCAECH---RPLDSMLACDGPDKEIHCRACY 572
WH CF+C CH + D +HC C+
Sbjct: 2053 WHDDCFSCVVCHVRFGTAEQRSPLKITDSLLHCENCF 2089
>SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)
Length = 841
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 602 TESLGPEKLSVTSAAMD--LLVGTVAR*HRVQWSMTFRTVKA 483
T+ GP +SV+ +A++ ++VG AR R+ W +T R + A
Sbjct: 777 TKKFGPNAISVSLSALNRHVVVGLAAR--RIHWHLTSRQMMA 816
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +3
Query: 183 CRDCTKTLDSIIACDGPDGEVYCKTCYGKKWGPHGYGFACGSGFLQTDG--LTEEEISAS 356
C+DC + D +CDG +T + + G G + G + DG E+
Sbjct: 321 CKDCAE--DFCRSCDGVFHRNPARTSHTRM--KLGGGASKGEATRKPDGPPAPEDRFKGK 376
Query: 357 RPFYNPDTTSIKAPKGQGCPR 419
RP P S+K P + P+
Sbjct: 377 RPIPTPRKRSVKEPPNKPSPQ 397
>SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +3
Query: 111 CGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKWG 278
C G V A G+ WH + F C C K + G YC+T Y + +G
Sbjct: 83 CCGRPVEDRVVHALGKAWHVEHFVCAKCEKPFYGHRYYE-RKGLAYCETHYNELYG 137
>SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 777
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWH--KKCFNCAECHRPLDSML 527
C CG FA + L + + H +K +NC EC P D ++
Sbjct: 388 CDECG-KCFALKAHLKRHLVIHSGRKPYNCDECEFPRDKLV 427
>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
Length = 399
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 54 TTVIDTASIKA-PPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTK 200
+T++ T S+K P C CGG + A ++ W CF+ CTK
Sbjct: 30 STMLRTLSLKELNPHIICVLCGGYLVDATTIIECLHSWQITCFR-TSCTK 78
>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +3
Query: 300 CGSGFLQTDGLTEEEISASRPFYNPDTTSIK-APKGQGCPRCGGMVFAAEQQLAKGTMWH 476
CG GF+Q GL + P N + +++K A + C C M F L H
Sbjct: 422 CGQGFVQRSGLNKHLRCRRCP--NIEGSAVKIALRKYECNVCNRM-FPGPSDLKAHRRTH 478
Query: 477 --KKCFNCAECHR 509
+K F C CH+
Sbjct: 479 TGEKPFECPVCHK 491
>SB_55909| Best HMM Match : Sushi (HMM E-Value=2.3e-31)
Length = 526
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 336 QLSHRFARSQSRKRIRNHEVPISFRSKFCNRLRHQVH 226
++ HR+ R+ + + H + + +K NR RH VH
Sbjct: 119 RIKHRWGRATNMRDAFQHTINVIKNAKAHNRKRHNVH 155
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Frame = +3
Query: 231 PDGEVYCKTCYGKKW--GPHGYGFACGSGFLQTDGLTEEEISASR------PFYNPDTTS 386
P G+ YC+ YG++W GP GF C L S + P Y+ ++T
Sbjct: 1626 PPGQ-YCEG-YGREWPNGPCDPGFYCSRASYSKRPLPSSGESYNNSDHFSCPIYSVNSTG 1683
Query: 387 IKAPKGQGCP 416
P G CP
Sbjct: 1684 AICPSGTYCP 1693
>SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = -3
Query: 287 TMRSPFLSVASFAIDFAIRSIASNDGVQSFCAIAALETFAMPLAAFGQNLFSSKHNSTAT 108
T+ + F S+ FA+ F+I ++ S C++ +++ A F N ++
Sbjct: 3 TLGARFASMYYFALGFSIDALRGQFRENSLCSLFSIDALR---ARFSGNALAASSKEEDC 59
Query: 107 RAALARRGFNGCSIN 63
+ + R NG +N
Sbjct: 60 TSVIGRFNANGVDLN 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,928,525
Number of Sequences: 59808
Number of extensions: 490189
Number of successful extensions: 1595
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1588
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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