Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1135
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.58 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.4  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   7.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 570  NKRGNGSPCRDRRTLTSSPVVDDIPHS*STSCAT 469
            NK G+G    +RR  T+  V +  PH   T+C T
Sbjct: 1061 NKVGSGPMSEERRQHTAEGVPEQPPH--DTTCTT 1092


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 206 GLHHCLRWT*WRSLLQNLLRKEMGT 280
           G H+CLRW  ++S + ++  + + T
Sbjct: 8   GQHYCLRWNNYQSNMTSVFHQLLQT 32


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 354  SRPFYNPDTTSIKAPKGQG 410
            +RP    D TS+  PK +G
Sbjct: 1059 TRPMIPDDNTSLALPKNEG 1077


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -2

Query: 543  RDRRTLTSSP 514
            RDR+TLTS+P
Sbjct: 1438 RDRKTLTSAP 1447


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
 Frame = +3

Query: 477 KKCFNCAECHR------PLDSMLACDGPDKEIHCRAC 569
           +K F C ECH+       L + +     +K  HC  C
Sbjct: 7   EKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHC 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,337
Number of Sequences: 438
Number of extensions: 4063
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)