Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1135
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 73 2e-13
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 60 1e-09
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 59 3e-09
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 58 5e-09
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 56 2e-08
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 52 4e-07
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 37 0.012
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 36 0.028
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 36 0.028
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 35 0.037
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot... 35 0.037
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 33 0.11
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 32 0.34
At4g38200.1 68417.m05392 guanine nucleotide exchange family prot... 31 0.45
At1g64500.1 68414.m07312 glutaredoxin family protein 29 0.48
At1g61620.1 68414.m06943 expressed protein contains Pfam profile... 31 0.60
At5g47225.1 68418.m05823 hypothetical protein 31 0.79
At5g54062.1 68418.m06725 hypothetical protein 29 2.4
At4g26680.1 68417.m03844 pentatricopeptide (PPR) repeat-containi... 28 4.2
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ... 28 4.2
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t... 28 5.6
At2g21630.1 68415.m02573 transport protein, putative similar to ... 28 5.6
At5g67260.1 68418.m08478 cyclin family protein similar to cyclin... 27 7.4
At5g59400.2 68418.m07444 expressed protein predicted protein, Ar... 27 7.4
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot... 27 7.4
At1g03280.1 68414.m00306 transcription initiation factor IIE (TF... 27 7.4
At5g15540.1 68418.m01819 expressed protein low similarity to DNA... 27 9.7
At5g09840.1 68418.m01138 expressed protein contains Pfam profile... 27 9.7
At2g13800.1 68415.m01523 leucine-rich repeat family protein / pr... 27 9.7
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 72.5 bits (170), Expect = 2e-13
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKWGP 281
C C V+ + + +G +H+ CF+C C TL I DG +YCKT + + +
Sbjct: 11 CKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTL-VICNYSSMDGVLYCKTHFEQLFKE 69
Query: 282 HGYGFACGSGFLQTDGLTEEEISASRPFYNPD-TTSIKAPKGQGCPRCGGMVFAAEQQLA 458
G F S QT G TE+ A++ P+ +S + C C V+ E+
Sbjct: 70 SG-NF---SKNFQTAGKTEKSNDATKA---PNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122
Query: 459 KGTMWHKKCFNCAECHRPL--DSMLACDGPDKEIHCRACYAKLFGPKG 596
+G +HK CF CA PL S A DG ++C+ +++LF KG
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDG---VLYCKVHFSQLFLEKG 167
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 60.1 bits (139), Expect = 1e-09
Identities = 47/170 (27%), Positives = 69/170 (40%), Gaps = 5/170 (2%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYG---KK 272
C C V+ + + +G +H+ CF+C C TL I DG +YCK + K+
Sbjct: 10 CKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTL-VISNYSSMDGVLYCKPHFEQLFKE 68
Query: 273 WGPHGYGFACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAAEQQ 452
G + F G D LT S F T K C C V+ E+
Sbjct: 69 SGNYSKNFQAGKTEKPNDHLTRTPSKLSSFF---SGTQDK------CATCKKTVYPLEKV 119
Query: 453 LAKGTMWHKKCFNCAECHRPL--DSMLACDGPDKEIHCRACYAKLFGPKG 596
+G +HK CF C PL S + +G ++C+ + +LF KG
Sbjct: 120 TMEGESYHKTCFRCTHSGCPLTHSSYASLNG---VLYCKVHFNQLFLEKG 166
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 58.8 bits (136), Expect = 3e-09
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 2/167 (1%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKWGP 281
C C V+ +++ A R +H+ CF+C C TL + + +G +YC+ + + +
Sbjct: 10 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTL-KLSNYNSFEGVLYCRPHFDQNFKR 68
Query: 282 HGYGFACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAAEQQLAK 461
G G + G + + RP +++ + C C V+ E+
Sbjct: 69 TGSLEKSFEGTPKI-GKPDRPLEGERP-AGTKVSNMFGGTREKCVGCDKTVYPIEKVSVN 126
Query: 462 GTMWHKKCFNCAE--CHRPLDSMLACDGPDKEIHCRACYAKLFGPKG 596
GT++HK CF C C + +A +G +++C+ + +L KG
Sbjct: 127 GTLYHKSCFKCTHGGCTISPSNYIAHEG---KLYCKHHHIQLIKEKG 170
Score = 31.5 bits (68), Expect = 0.45
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 405 QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAEC 503
Q C C V+ ++ A ++HK CF C C
Sbjct: 8 QKCMACDKTVYLVDKLTADNRVYHKACFRCHHC 40
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 58.0 bits (134), Expect = 5e-09
Identities = 45/165 (27%), Positives = 70/165 (42%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKWGP 281
C C V+ + + +G +H+ CF+C C TL + DG +YCKT + + +
Sbjct: 10 CNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTL-QMSNYSSMDGVLYCKTHFEQLFKE 68
Query: 282 HGYGFACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAAEQQLAK 461
G F+ F G TE+ P +SI C C V+ E+ +
Sbjct: 69 SG-NFS--KNF--QPGKTEKPELTRTP---SKISSIFCGTQDKCAACEKTVYPLEKIQME 120
Query: 462 GTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPKG 596
G +HK CF CA L + + D ++CR + +LF KG
Sbjct: 121 GECFHKTCFRCAHGGCTL-THSSYASLDSVLYCRHHFNQLFMEKG 164
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 55.6 bits (128), Expect = 2e-08
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 2/167 (1%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKWGP 281
C C V+A E + A G +H+ CFKC C L + + +G +YCK + + +
Sbjct: 10 CKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRL-QLSSYSSMEGVLYCKPHFEQLFKE 68
Query: 282 HGYGFACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAAEQQLAK 461
G + F Q+ + ++ + + + C C V+ E+ +
Sbjct: 69 SG---SFNKNF-QSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVE 124
Query: 462 GTMWHKKCFNCAECHRPL--DSMLACDGPDKEIHCRACYAKLFGPKG 596
+HK CF C+ P+ + A +G ++C+ +A+LF KG
Sbjct: 125 SQTYHKSCFKCSHGGCPISPSNYAALEG---ILYCKHHFAQLFKEKG 168
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 405 QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 584
Q C C V+A E A G +HK CF C C L + + + ++C+ + +LF
Sbjct: 8 QKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRL-QLSSYSSMEGVLYCKPHFEQLF 66
Query: 585 GPKG 596
G
Sbjct: 67 KESG 70
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 51.6 bits (118), Expect = 4e-07
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 5/170 (2%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYG---KK 272
C C V+ E + A G +H+ CFKC C L + +G VYC+ + K+
Sbjct: 10 CRACEKTVYPVELLSADGISYHKACFKCSHCKSRL-QLSNYSSMEGVVYCRPHFEQLFKE 68
Query: 273 WGPHGYGFACGSGFLQTDGLTEEEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAAEQQ 452
G F + L E + SR + + C C V+ E+
Sbjct: 69 SGSFSKNFQSPAKPLTDKPTPELNRTPSR------LAGMFSGTQDKCATCTKTVYPIEKV 122
Query: 453 LAKGTMWHKKCFNCAECHRPL--DSMLACDGPDKEIHCRACYAKLFGPKG 596
+ +HK CF C+ P+ + A +G ++C+ +A+LF KG
Sbjct: 123 TVESQCYHKSCFKCSHGGCPISPSNYAALEG---ILYCKHHFAQLFKEKG 169
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 405 QGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLF 584
Q C C V+ E A G +HK CF C+ C L + + ++CR + +LF
Sbjct: 8 QKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRL-QLSNYSSMEGVVYCRPHFEQLF 66
Query: 585 GPKG 596
G
Sbjct: 67 KESG 70
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 420 CGGMVFAAEQQLAK---GTMWHKKCFNCAECHRPL 515
CGG FA E + G +WH CF C CH+P+
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPI 320
Score = 31.1 bits (67), Expect = 0.60
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +3
Query: 111 CGGVVFAAEQ---VLAKGREWHRKCFKCRDCTKTL 206
CGG FA E V G WH CF CR C K +
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPI 320
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 35.5 bits (78), Expect = 0.028
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Frame = +3
Query: 87 PPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTK--TLDSIIACDGPDGEVYCKTC 260
PP C C + + A G WH +CF C C + ++ I G +Y K C
Sbjct: 1235 PPLSKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDLRG----MYHKPC 1290
Query: 261 YGKKWGPHGYGFACGSGFLQT-DGLTEEEISASRPFYNPDTTSIKAPKGQGCPRC 422
Y + P+ Y C +T +GL E PF+ T + G G P+C
Sbjct: 1291 YKELRHPNCY--VCEKKIPRTAEGLKYHE----HPFWM--ETYCPSHDGDGTPKC 1337
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGP 590
C C + A G++WH +CF C C P+ D + ++ + CY +L P
Sbjct: 1240 CKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISD--LRGMYHKPCYKELRHP 1297
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 35.5 bits (78), Expect = 0.028
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 465 TMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKLFGPK 593
++WH +CF C C +P+ + H +ACY + + PK
Sbjct: 190 SLWHPECFRCYGCSQPISEYEFSTSGNYPFH-KACYRERYHPK 231
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 162 WHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGKKWGP 281
WH +CF+C C++ + S + K CY +++ P
Sbjct: 192 WHPECFRCYGCSQPI-SEYEFSTSGNYPFHKACYRERYHP 230
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 35.1 bits (77), Expect = 0.037
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 87 PPGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTL 206
PP C C V E V G WH CF CR C K +
Sbjct: 342 PPLSMCGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPI 381
Score = 32.7 bits (71), Expect = 0.20
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPL 515
C C V E G +WH CF C C +P+
Sbjct: 347 CGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPI 381
>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 688
Score = 35.1 bits (77), Expect = 0.037
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +2
Query: 362 FLQPGYDQHQGSEGPRLSALWWDGLCCRAAVGQGHYVAQEVL*LCGMSSTTGLDVSVRRS 541
F PG D +GS+ PR+S C + VG+ V++ VL L G+SS+ ++ +RR
Sbjct: 14 FEAPGGDYDEGSDSPRVSE---GSNCSKRKVGETFGVSKMVLPLSGLSSSDRKEL-IRRL 69
Query: 542 RQ 547
RQ
Sbjct: 70 RQ 71
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 90 PGKGCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTL 206
P C C + V A G WH +CF CR C K +
Sbjct: 197 PHSICDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPI 235
Score = 31.1 bits (67), Expect = 0.60
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPL 515
C C + A G WH +CF C C +P+
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPI 235
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 462 GTMWHKKCFNCAECHRP-LDSMLACDGPDKEIHCRACYAKLFGPK 593
G +WH +CF C C +P +D + G ++ H + CY + PK
Sbjct: 2 GGVWHPECFCCNACDKPIIDYEFSMSG-NRPYH-KLCYKEQHHPK 44
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 153 GREWHRKCFKCRDCTK-TLDSIIACDGPDGEVYCKTCYGKKWGP 281
G WH +CF C C K +D + G Y K CY ++ P
Sbjct: 2 GGVWHPECFCCNACDKPIIDYEFSMSG--NRPYHKLCYKEQHHP 43
>At4g38200.1 68417.m05392 guanine nucleotide exchange family protein
similar to Brefeldin A-inhibited guanine
nucleotide-exchange protein 2 [Homo sapiens] SP|Q9Y6D5;
contains Pfam profile PF01369: Sec7 domain
Length = 1698
Score = 31.5 bits (68), Expect = 0.45
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 408 GCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSMLA-CDGPD 545
G RCG ++ + ++ K W K F + C LD + A D PD
Sbjct: 9 GATRCGRVIGPSLDKIIKNAAWRKHTFLVSACKSVLDKLEALSDSPD 55
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +3
Query: 99 GCPRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIA-CDGPD 236
G RCG V+ + + K W + F C LD + A D PD
Sbjct: 9 GATRCGRVIGPSLDKIIKNAAWRKHTFLVSACKSVLDKLEALSDSPD 55
>At1g64500.1 68414.m07312 glutaredoxin family protein
Length = 368
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHRKCFKCRD 191
C CGG A AKG W R C KC +
Sbjct: 328 CFECGGSCKVAAVGAAKGERWER-CVKCNE 356
Score = 26.2 bits (55), Expect(2) = 0.48
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 411 CPRCGGMVFAAEQQLAKGTMWHKKCFNCAE 500
C CGG A AKG W ++C C E
Sbjct: 328 CFECGGSCKVAAVGAAKGERW-ERCVKCNE 356
Score = 23.8 bits (49), Expect(2) = 0.48
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 228 GPDGEVYCKTCYGKKWGPHGYGFACG 305
G +G + C+ C G +W P F CG
Sbjct: 310 GEEGRLTCEGCGGARWLP---CFECG 332
>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
PF01363 FYVE zinc finger
Length = 310
Score = 31.1 bits (67), Expect = 0.60
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +3
Query: 339 EEISASRPFYNPDTTSIKAPKGQGCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLD 518
E+ S +S K CP C + +A + H C CAE P+D
Sbjct: 197 EDNSEEEETKTKSASSSSYDKSYICPSCKVTLTNTMSLVALSSCGHVFCKKCAEKFMPVD 256
Query: 519 SM-LACDGPDKE 551
+ L CD P K+
Sbjct: 257 KVCLVCDKPCKD 268
>At5g47225.1 68418.m05823 hypothetical protein
Length = 351
Score = 30.7 bits (66), Expect = 0.79
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 348 SASRPFYNPDTTSIKAPKGQGCPRCG 425
S P P T++KA + CPRCG
Sbjct: 52 SCDHPLQGPSVTALKAQADKKCPRCG 77
>At5g54062.1 68418.m06725 hypothetical protein
Length = 207
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +3
Query: 189 DCTKTLDSIIACDGPDGEVYCKTCYGKKWGPHGYGFACGSGFLQTDGLTEEEISASRPFY 368
D TK L S++ G E+Y GK GF C F+ D ++ PF+
Sbjct: 132 DLTKCLSSLVNVQGCVTEIYKSVFTGKC---DNVGFMCCKAFMAVDAKCWPKMFPLNPFF 188
Query: 369 NP 374
P
Sbjct: 189 PP 190
>At4g26680.1 68417.m03844 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 521
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 151 LAKTCSAANTTPPQRGQPLPGGALMDAVSI 62
L KT AANT P R P P G +D V++
Sbjct: 30 LFKTLGAANTPIPHRRNPEPKGQDLDFVNV 59
>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 679
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/55 (27%), Positives = 20/55 (36%)
Frame = +3
Query: 105 PRCGGVVFAAEQVLAKGREWHRKCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGK 269
PRC + L +G ++H C C D D C C+ CY K
Sbjct: 72 PRCRSMPLTRPHTLREGNDYHSSCDTCGDEVSENDRSYHCP------TCEMCYHK 120
>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
cysteine endopeptidase precursor CysEP GI:2944446 from
[Ricinus communis]
Length = 361
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 234 DGEVY--CKTCYGKKWGPHGYGFACGSGFLQTDGLTEEEISASRPFYNPDT 380
DG Y K +G++WG GY G +GL + AS P N +T
Sbjct: 298 DGTKYWIVKNSWGEEWGEKGY-IRMQRGIRHKEGLCGIAMEASYPLKNSNT 347
>At2g21630.1 68415.m02573 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 761
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 389 QGSEGPRLSALWWDGLCCRAAVGQGHYVAQEVL*LCGMSSTTGL 520
QG GP S LC A+GQGH A + +CG+ + T +
Sbjct: 418 QGIIGPCASLEKKGPLCSDTAIGQGHTSAWK---MCGLDNNTSI 458
>At5g67260.1 68418.m08478 cyclin family protein similar to cyclin
D3.1 protein [Nicotiana tabacum] GI:4160300; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 367
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 153 GREWHRKCFKCRDCTKTLDSIIA 221
G +WH++ CR C + L S+IA
Sbjct: 212 GSKWHQQLDFCRKCERLLISVIA 234
>At5g59400.2 68418.m07444 expressed protein predicted protein,
Arabidopsis thaliana
Length = 301
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +3
Query: 102 CPRCGGVVFAAEQVLAKGREWHR-KCFKCRDCTKTLDSIIACDGPDGEVYCKTCYGK 269
CP CG VFA + R H+ C C +CT + + D + K YG+
Sbjct: 230 CPNCGEEVFAFVRSDQSNRSAHKADCHVC-ECTLEFRTKVEVDKSASRLGRKWVYGR 285
>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
similar to guanine nucleotide exchange factor [Homo
sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
domain
Length = 1706
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = +3
Query: 408 GCPRCGGMVFAAEQQLAKGTMWHKKCFNCAECHRPLDSM 524
G RCG ++ + ++ K W K + + C LD +
Sbjct: 9 GATRCGRIIGPSLDKIIKNAAWRKHTYLVSSCKSVLDKL 47
>At1g03280.1 68414.m00306 transcription initiation factor IIE
(TFIIE) alpha subunit family protein / general
transcription factor TFIIE family protein contains Pfam
profile: PF02002 TFIIE alpha subunit
Length = 479
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +3
Query: 459 KGTMWHKKCFNCAECHRPLDSMLACDGPDKEIHCRACYAKL 581
K T+ C NC + LD++ D HC C +L
Sbjct: 160 KNTVQEYGCPNCQRKYNALDALRLISMVDDSFHCENCNGEL 200
>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
repair and meiosis protein Rad9 [Coprinus cinereus]
GI:1353390, SP|Q09725 Sister chromatid cohesion protein
mis4 {Schizosaccharomyces pombe}
Length = 1755
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 303 RKRIRNHEVPISFRSKFCNRLRHQVHRKQ 217
R ++ H VP+ S+ L HQ+HR +
Sbjct: 287 RSKMLLHMVPVDILSRLLRTLDHQIHRAE 315
>At5g09840.1 68418.m01138 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 924
Score = 27.1 bits (57), Expect = 9.7
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 383 QHQGSEGPRLSALWWDGLCCRAAVGQGHY-VAQEVL*LCGMSSTTGLDVSVRRSRQGDPL 559
Q + S R+S +WWD L C V Y VAQ + S G +++ L
Sbjct: 64 QDEESRSVRVS-VWWDFLSCNLPVDTNVYKVAQSITAAIRNSGIKG-PITITAFGDVLQL 121
Query: 560 PRLLR*AFRAQGIRL 604
PR + A A GI L
Sbjct: 122 PRSNQDALSATGISL 136
>At2g13800.1 68415.m01523 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 601
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 163 GIANVSSAAIAQKLWTPSLLAMDLMAKSIAKLATERNGDLMVTDSLAALAS 315
G AN+S + Q P+L ++L +I E GDLM SL A+
Sbjct: 78 GSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFAN 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,247,535
Number of Sequences: 28952
Number of extensions: 309896
Number of successful extensions: 994
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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