BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1134 (655 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 28 1.0 SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 28 1.0 SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 28 1.4 SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 27 3.1 SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 4.1 SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 5.5 SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 5.5 SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 5.5 SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 7.2 SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.2 SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.2 SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.5 SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 9.5 >SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccharomyces pombe|chr 1|||Manual Length = 200 Score = 28.3 bits (60), Expect = 1.0 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +2 Query: 461 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 580 I R S H R+ G +R Q R+K R S GP+R Sbjct: 3 ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42 >SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosaccharomyces pombe|chr 1|||Manual Length = 200 Score = 28.3 bits (60), Expect = 1.0 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +2 Query: 461 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 580 I R S H R+ G +R Q R+K R S GP+R Sbjct: 3 ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42 >SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 27.9 bits (59), Expect = 1.4 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = -1 Query: 547 PVCAMGTFLSPLTASGTFLGAVMVRTP-SDDSRDSTVSGAAP 425 P + FL+P+T SGTF + P S R +T S A P Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425 >SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 390 Score = 26.6 bits (56), Expect = 3.1 Identities = 14/37 (37%), Positives = 15/37 (40%) Frame = +1 Query: 397 SSSDVTRCLKARRLRLWNRGCHQTGFSPSPRRGRYPT 507 SS TR + R RGC T P PR G T Sbjct: 319 SSKGPTRLYEVARFNCTTRGCEYTQNIPCPRAGHSHT 355 >SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosaccharomyces pombe|chr 1|||Manual Length = 378 Score = 26.2 bits (55), Expect = 4.1 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = -1 Query: 604 LFSASWVPSLWSLISLR 554 L+S+SW+P+L L+S R Sbjct: 285 LYSSSWIPTLHDLVSTR 301 >SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 309 Score = 25.8 bits (54), Expect = 5.5 Identities = 9/20 (45%), Positives = 16/20 (80%) Frame = +3 Query: 171 ACPVLSEDYFRPWRQLAAAS 230 +CP+ +EDY++ + Q+ AAS Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261 >SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21|Schizosaccharomyces pombe|chr 3|||Manual Length = 911 Score = 25.8 bits (54), Expect = 5.5 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 426 GAAPETVESRLSSDGVLTITAPRKVPD 506 G P T+ES ++ D L I RK+ D Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478 >SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 1283 Score = 25.8 bits (54), Expect = 5.5 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = -1 Query: 529 TFLSPLTASGTFLGAVMVRTPSDDS-RDSTVSGAAP 425 +F+S +TA T GAV+V P+ + ++ VSG+ P Sbjct: 783 SFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIP 818 >SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr 2|||Manual Length = 1018 Score = 25.4 bits (53), Expect = 7.2 Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Frame = +1 Query: 163 LPSPVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSIWTCSTSRRKRFR*RLPTGTS 342 L P++ P TTSD + V+S+P+ R S+ T + T ++ Sbjct: 260 LDEPIKALPSTTSDAPSSLLNTNVSSSPS--KFRKFLSSVIPAKTDLSAK---ESLTSST 314 Query: 343 W*KASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRGC--HQTGFSPSP 486 S K RK S+G+ SS VT K R+ + N H T F P Sbjct: 315 RLSTSYKTRKRSSGV-AFSSETVTSSSKERKRSVENEMLKPHPTIFESPP 363 >SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1131 Score = 25.4 bits (53), Expect = 7.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 177 PVLSEDYFRPWRQLAAASRDLGSSIKADKDKFQVNL 284 P SED P + L A ++ +K+D ++F+V++ Sbjct: 439 PTSSEDNLHPLQPLTTADEEMDLDLKSD-ERFKVDI 473 >SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 860 Score = 25.4 bits (53), Expect = 7.2 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 172 PVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSI 282 PVQ SP TSD+ D +L+ + P S+SI Sbjct: 622 PVQVSPLFTSDKNDPLQLNPQSDDSTSSPKHGKSRSI 658 >SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 1420 Score = 25.0 bits (52), Expect = 9.5 Identities = 8/35 (22%), Positives = 18/35 (51%) Frame = +2 Query: 470 GSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGP 574 G H ++ + + ++ ++ HR R + D+GP Sbjct: 725 GHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGP 759 >SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual Length = 706 Score = 25.0 bits (52), Expect = 9.5 Identities = 13/26 (50%), Positives = 13/26 (50%) Frame = +1 Query: 481 SPRRGRYPTPSRERERCPSHRPVPFA 558 S RR R P R R R S RP P A Sbjct: 198 SRRRSRSRRPGRSRSRRRSRRPSPSA 223 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,694,830 Number of Sequences: 5004 Number of extensions: 53115 Number of successful extensions: 144 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 138 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 144 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 295793106 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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