Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1134
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    28   1.0  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    28   1.0  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    28   1.4  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    27   3.1  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   4.1  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   5.5  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   5.5  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   5.5  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   7.2  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   7.2  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.5  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   9.5  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 461 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 580
           I R S H R+  G +R Q R+K      R  S    GP+R
Sbjct: 3   ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 461 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 580
           I R S H R+  G +R Q R+K      R  S    GP+R
Sbjct: 3   ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 547 PVCAMGTFLSPLTASGTFLGAVMVRTP-SDDSRDSTVSGAAP 425
           P  +   FL+P+T SGTF  +     P S   R +T S A P
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 397 SSSDVTRCLKARRLRLWNRGCHQTGFSPSPRRGRYPT 507
           SS   TR  +  R     RGC  T   P PR G   T
Sbjct: 319 SSKGPTRLYEVARFNCTTRGCEYTQNIPCPRAGHSHT 355


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 604 LFSASWVPSLWSLISLR 554
           L+S+SW+P+L  L+S R
Sbjct: 285 LYSSSWIPTLHDLVSTR 301


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 171 ACPVLSEDYFRPWRQLAAAS 230
           +CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 426 GAAPETVESRLSSDGVLTITAPRKVPD 506
           G  P T+ES ++ D  L I   RK+ D
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 529 TFLSPLTASGTFLGAVMVRTPSDDS-RDSTVSGAAP 425
           +F+S +TA  T  GAV+V  P+  +  ++ VSG+ P
Sbjct: 783 SFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIP 818


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
 Frame = +1

Query: 163 LPSPVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSIWTCSTSRRKRFR*RLPTGTS 342
           L  P++  P TTSD   +     V+S+P+    R    S+    T    +      T ++
Sbjct: 260 LDEPIKALPSTTSDAPSSLLNTNVSSSPS--KFRKFLSSVIPAKTDLSAK---ESLTSST 314

Query: 343 W*KASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRGC--HQTGFSPSP 486
               S K RK S+G+   SS  VT   K R+  + N     H T F   P
Sbjct: 315 RLSTSYKTRKRSSGV-AFSSETVTSSSKERKRSVENEMLKPHPTIFESPP 363


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 177 PVLSEDYFRPWRQLAAASRDLGSSIKADKDKFQVNL 284
           P  SED   P + L  A  ++   +K+D ++F+V++
Sbjct: 439 PTSSEDNLHPLQPLTTADEEMDLDLKSD-ERFKVDI 473


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 172 PVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSI 282
           PVQ SP  TSD+ D  +L+  +      P    S+SI
Sbjct: 622 PVQVSPLFTSDKNDPLQLNPQSDDSTSSPKHGKSRSI 658


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +2

Query: 470 GSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGP 574
           G  H ++ +  + ++ ++   HR  R   + D+GP
Sbjct: 725 GHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGP 759


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 481 SPRRGRYPTPSRERERCPSHRPVPFA 558
           S RR R   P R R R  S RP P A
Sbjct: 198 SRRRSRSRRPGRSRSRRRSRRPSPSA 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,830
Number of Sequences: 5004
Number of extensions: 53115
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)