Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1134
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 61 7e-10
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 54 1e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 54 1e-07
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 53 2e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 52 4e-07
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 51 7e-07
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 49 4e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 38 0.009
SB_32739| Best HMM Match : PA (HMM E-Value=0.19) 31 0.62
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_41042| Best HMM Match : Recep_L_domain (HMM E-Value=6.8) 30 1.9
SB_30696| Best HMM Match : ERCC4 (HMM E-Value=5.9) 30 1.9
SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_10409| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_3054| Best HMM Match : RVT_1 (HMM E-Value=1.6e-09) 30 1.9
SB_35239| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29) 29 3.3
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 29 4.4
SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09) 29 4.4
SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06) 28 5.8
SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 28 5.8
SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08) 28 7.6
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 61.3 bits (142), Expect = 7e-10
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +3
Query: 258 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 434
D DKFQ+ LDV+ F PEEI+ K +G I V + S++F R Y LPEG
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGVD 60
Query: 435 PETVESRLSSDGVLTITAPRKVPDAVKGERKVP 533
++ +R++ DG+L + A +K P A E K P
Sbjct: 61 ESSISTRIAEDGMLHVEALKKSPPATT-ENKAP 92
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +3
Query: 258 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAP 437
D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDM 154
Query: 438 ETVESRLSSDGVLTITAPRK 497
+T+ RL DGVL I A ++
Sbjct: 155 DTLVPRLGKDGVLYIEADKR 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +3
Query: 255 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 431
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 432 APETVESRLSSDGVLTITAPRKVPDAVKGERK 527
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 234 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 413
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 414 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 536
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +3
Query: 255 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 431
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 432 APETVESRLSSDGVLTITAPRKVPDAVKGERK 527
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 234 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 413
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 414 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 536
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 237 LGSSIKADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 413
L ++ + + DK ++ LDV+++ PEEIS+K G I + Y + +F R Y
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YETSEFHRSY 87
Query: 414 ALPEGAAPETVESRLSSDGVLTITAPRKVP 503
LP+G TV SR++ DG+L I A + P
Sbjct: 88 NLPDGVDVSTVSSRITGDGLLHIEALKAEP 117
Score = 27.5 bits (58), Expect(2) = 0.083
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 216 LAAASRDLGSSIKADKDKFQVNLDVQHFSPE 308
+ A++ G K D +F V LDV FSP+
Sbjct: 125 VGASTGSAGDIAKIDDKRFTVTLDVSSFSPD 155
Score = 25.8 bits (54), Expect(2) = 0.083
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 405 RRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 536
R + LP+ +++ SRL DG L I A +++ ER+V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEA-KRILHPTPHERQVNI 203
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +3
Query: 255 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 431
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 432 APETVESRLSSDGVLTITAPRKVPDAVKGERK 527
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +3
Query: 264 DKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 440
D+ ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297
Query: 441 TVESRLSSDGVLTITAPRKVPDAVKGERK 527
V++R+S+ G L I A + +P GE +
Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEEE 326
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 234 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 413
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 321 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 379
Query: 414 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 536
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 380 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 420
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 234 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 413
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 414 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 536
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKL 186
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +3
Query: 255 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 431
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 432 APETVESRLSSDGVLTITAPRKVPDAVKGERK 527
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 234 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 413
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 414 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 536
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 51.2 bits (117), Expect = 7e-07
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +3
Query: 255 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 431
A K+ ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 2 AKKNTLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGI 60
Query: 432 APETVESRLSSDGVLTITAPRKVP 503
PE V SR+S+ G L I A + +P
Sbjct: 61 DPENVTSRISNHGHLHIEARKALP 84
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/95 (27%), Positives = 45/95 (47%)
Frame = +3
Query: 252 KADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 431
KA +DKF + +DV F PE I V+ ++V Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150
Query: 432 APETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 536
+++ +RL +G L A + V A+ R++ +
Sbjct: 151 DMDSLTTRLDKEGKLHFEAKKSVAPALPPVRELMV 185
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 48.8 bits (111), Expect = 4e-06
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Frame = +3
Query: 258 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 434
+++K ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62
Query: 435 PETVESRLSSDGVLTITAPRKV--PDAVKGERK 527
V++R+S+ G L I A + + PD K E K
Sbjct: 63 ASNVKTRISNHGQLHIEAMKALPEPDGAKKESK 95
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/99 (24%), Positives = 47/99 (47%)
Frame = +3
Query: 240 GSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYAL 419
G+ ++ DKF + +DV+ F PE I V+ ++V Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFIL 147
Query: 420 PEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 536
P +++ +RL +G L A ++ A+ R++ +
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +3
Query: 225 ASRDLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFV 404
A+++ S+ D KF + LDV F PEE+ VK G+ + + +RQF
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFN 71
Query: 405 RRYALPE 425
R + LP+
Sbjct: 72 RHFVLPQ 78
>SB_32739| Best HMM Match : PA (HMM E-Value=0.19)
Length = 319
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 172 PVQCSPKTTSDRGDNSRLHLVTSAP---A*RPTRTSSKSIWTCSTS 300
P+ P++ R D R L S P A T T S S+WTCS S
Sbjct: 273 PLDLKPRSNVMRVDEGRYELKLSCPFHCAFSHTLTDSHSLWTCSNS 318
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 230 RCSRELSPRSEVVFGEHWTGDGSQHVVRG*RQP 132
R SR SP + FG TGDG QH+V+ +P
Sbjct: 100 RASRTPSPSDSIDFGAVETGDGLQHLVKERARP 132
>SB_41042| Best HMM Match : Recep_L_domain (HMM E-Value=6.8)
Length = 215
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +2
Query: 443 CGIAAVIRRGS--HHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPERGNPGCRK 601
CG RRG +H + EE RQ +G R DR+ + G GC K
Sbjct: 157 CGWRCSKRRGRIIYHRKPEEPQETRQDHSQGGRRGDRASCIPNLRDALGARGCEK 211
>SB_30696| Best HMM Match : ERCC4 (HMM E-Value=5.9)
Length = 260
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 489 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAE 599
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 146 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 182
>SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 735
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 489 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAE 599
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 588 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 624
>SB_10409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 489 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAE 599
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 34 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 70
>SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +2
Query: 488 AEEGTRRRQGREKGAHRTDRSRSQGDQGPE 577
A RR + R++GA +++ +R++G++GPE
Sbjct: 352 ATPSQRRLEARKRGALKSEGTRTEGNRGPE 381
>SB_3054| Best HMM Match : RVT_1 (HMM E-Value=1.6e-09)
Length = 829
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 489 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAE 599
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 706 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 742
>SB_35239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 489 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAE 599
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 100 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 136
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +1
Query: 475 SPSPRRGRY---PTPSRERERCPSHRPVP 552
SP PRR R P+P R R R PS+ P P
Sbjct: 916 SPPPRRRRKSPSPSPPRRRRRSPSNSPPP 944
>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
Length = 462
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 464 RRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPERG-NPGCRK 601
RRG EEG R +K A + R QG++ PE G N RK
Sbjct: 107 RRGQEQKTPEEGKNRNH--QKKARTENTRRRQGEKPPEEGKNRNTRK 151
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 489 PRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQDAE 599
PR+ P+ + R +P P+R E +D S +D++
Sbjct: 1326 PRRPPEGKRRRRILPQVPPRPIRHEAQDDSSSAEDSD 1362
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 654 RQYFGTN*NAPLQNHPTYFRHPGFPRSGP*SPCERD 547
R+ FGT PLQ + YF + + G +PC+R+
Sbjct: 608 RERFGTPIQLPLQLYDEYFFNVDYLTDGALAPCDRN 643
>SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)
Length = 1111
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 462 SDGVLTITAPRKVPDAVKGE-RKVPIAQTGPVRKEI 566
SD T + PD KGE RKVP+A P++ EI
Sbjct: 285 SDSSPTSDPVSEFPDVFKGEVRKVPLAVREPLKNEI 320
>SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)
Length = 353
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -3
Query: 254 LYAGAEVTRCSRELSPRSEVVFGE----HWTGDGSQH 156
LY+ V + +RE+ R ++ F E HWTG G H
Sbjct: 83 LYSSGNVNQAAREMGKR-DIDFMEISETHWTGQGKMH 118
>SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 480 ITAPRKVPDAVKGERKVPIAQTG 548
+T+ RKVP+ V +RKVP TG
Sbjct: 42 VTSQRKVPNMVTSQRKVPNMVTG 64
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 480 ITAPRKVPDAVKGERKVP 533
+T+ RKVP+ V G RKVP
Sbjct: 52 VTSQRKVPNMVTGRRKVP 69
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 477 TITAPRKVPDAVKGERKVP 533
T+T+ RKVP+ V RKVP
Sbjct: 91 TVTSQRKVPNMVSSRRKVP 109
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 435 PETVESRLSSDGVLTITAPRKVPDAVKGERKVP 533
P TV SR + +T+ RKVP+ V RKVP
Sbjct: 109 PNTVTSRRKVPNM--VTSRRKVPNMVTSRRKVP 139
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 390 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVP 533
SR+ V P V SR + +T+ R+VP+ V G+RKVP
Sbjct: 204 SRRKVPNMVTSRRKIPNMVTSRRKVPNM--VTSRREVPNMVTGQRKVP 249
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 443 CGIAAVIRRGSHHHRAEE 496
CG++ ++RRG +HH EE
Sbjct: 23 CGVSRILRRGYNHHLNEE 40
>SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)
Length = 1158
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 523 LSPLTASGTFLGAVMVRTPSDDSRDSTVSGAAPSGSA*RRTNCLE 389
L+ +A+ + + ++R +RDS+VS +AP R T CL+
Sbjct: 415 LAVASANHWYRSSAIIRWMRSRTRDSSVSSSAPYHGVSRYTTCLK 459
>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2492
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 486 APRKVPDAVKGERKVPIAQTGPVRKEIKDQSEGT 587
+PR V V+ ER++ ++Q+GP E+ +Q T
Sbjct: 1384 SPRSVKPVVRSERRIKLSQSGP-SSEMTEQKAQT 1416
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,436,156
Number of Sequences: 59808
Number of extensions: 455519
Number of successful extensions: 1578
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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