Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1134
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.9  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   4.5  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   4.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 500 TRRRQGREKGAHRTDRSRSQGDQGPERGNP 589
           T++ Q    GA     S  Q  Q P+RG+P
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQRGSP 39


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 476 HHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPERGNP 589
           + ++ E    R   +E+  +RT+R RS+  +     NP
Sbjct: 50  YKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNP 87


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 461 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 580
           I R   H R   G +R+  R+K      R  +    GP+R
Sbjct: 3   ISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQR 42


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 373 TSTGIFQGSSSDVTRCLKARRLRLWNRGC 459
           T   +F G  SD+      + L +W  GC
Sbjct: 241 TLVTMFTGLKSDIPPVAYVKALDVWMAGC 269


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 468 GVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQSE 581
           G  T T      D +  E  +PI +TG   K I ++ E
Sbjct: 141 GKSTTTTVEVKRDIINPEDVIPIRRTGEGSKPIFEREE 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,247
Number of Sequences: 438
Number of extensions: 4079
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)