Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1133
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.88 
SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   4.7  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    26   6.2  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   8.2  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -2

Query: 260 WHI*SLFCIFKICKNVVEDKQAST---PYCMVSQ 168
           +H+  L CI K CKN +E +       PYC  +Q
Sbjct: 217 YHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQSNQ 250


>SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 161

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 95  THEKSDSENTFCQRCLGQCEVCDIV 169
           TH+ SDSEN        +C+  D++
Sbjct: 130 THDSSDSENIMSDSSQSECDYADLM 154


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 222 AYLEDAKERLNMPE-FNKLFVHEILYRKKAFEQDLQHYLGDNWRSIPKSLALENYLQHL 395
           A +++  ER N+ E F + F  ++  RK+   + L H LG    S+     +  YL+ L
Sbjct: 389 ALIQNKLERGNLNELFAEFFADKLHNRKRKVTEILLHQLGFKGISLSHGKEIVRYLRSL 447


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 75   EQDLFTTRMRKATRKIHSVSDALVNAKFAISLR 173
            +QD      R   RK+H VS+ L N KF  S R
Sbjct: 1847 DQDTLLRENRNLERKLHEVSEQL-NKKFDSSAR 1878


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,251
Number of Sequences: 5004
Number of extensions: 64196
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)