Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1133
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0091 - 16515330-16515548,16515669-16515779,16517483-165175...    31   1.2  
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321...    28   6.4  

>06_03_0091 -
           16515330-16515548,16515669-16515779,16517483-16517524,
           16518067-16518181,16518820-16518914,16519916-16520015,
           16521169-16521264,16522276-16522349,16524581-16524629,
           16525414-16525483,16525553-16525652,16525721-16525779,
           16526633-16526684,16527199-16527405
          Length = 462

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 195 GLFVFYHIFAYLEDAKERLNMPEFNKLFVHEILYRKKA 308
           G+FV Y++  ++E+A ERLN  + + +F      R++A
Sbjct: 364 GVFVLYYMRRFIEEAPERLNNKDSSNMFGEGWFQREEA 401


>03_01_0418 -
           3211687-3211933,3212016-3212164,3212443-3212551,
           3212650-3212840,3212967-3213102,3213216-3213716,
           3213819-3213923,3214008-3214095,3214195-3214266,
           3214692-3214762,3215726-3216008,3216388-3216463
          Length = 675

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 407 KRQSQALNGL--CLSFVFRTPERWTDFIQEEEG 499
           K Q + L  L  C+S   R  ERW    QEE+G
Sbjct: 112 KTQEKRLGSLFGCMSVPLRNNERWQQHYQEEQG 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,304,811
Number of Sequences: 37544
Number of extensions: 382550
Number of successful extensions: 921
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)