Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1133
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-1|CAA86323.1|  462|Caenorhabditis elegans Hypothetical pr...    36   0.038
AL032626-10|CAA21531.1|  458|Caenorhabditis elegans Hypothetical...    36   0.038
AF106582-2|AAC78213.1|  457|Caenorhabditis elegans Hypothetical ...    36   0.038
AF039716-2|AAB96737.1|  462|Caenorhabditis elegans Hypothetical ...    36   0.038
AL021171-1|CAA15958.1|  204|Caenorhabditis elegans Hypothetical ...    34   0.12 
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    33   0.27 
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    33   0.27 

>Z46241-1|CAA86323.1|  462|Caenorhabditis elegans Hypothetical
           protein C38D4.1a protein.
          Length = 462

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 201 FVFYHIFAY--LEDAKERLNMPEFNKLFVHEILYRKKAFEQDLQH 329
           FV +HIF Y  LED K R     F +L   ++  RK+  + D QH
Sbjct: 119 FVIFHIFLYFYLEDQKAREQKKYFEELIAEQMAARKREEQDDQQH 163


>AL032626-10|CAA21531.1|  458|Caenorhabditis elegans Hypothetical
           protein Y37D8A.12a protein.
          Length = 458

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 201 FVFYHIFAY--LEDAKERLNMPEFNKLFVHEILYRKKAFEQDLQH 329
           FV +HIF Y  LED K R     F +L   ++  RK+  + D QH
Sbjct: 115 FVIFHIFLYFYLEDQKAREQKKYFEELIAEQMAARKREEQDDQQH 159


>AF106582-2|AAC78213.1|  457|Caenorhabditis elegans Hypothetical
           protein W05F2.2 protein.
          Length = 457

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 201 FVFYHIFAY--LEDAKERLNMPEFNKLFVHEILYRKKAFEQDLQH 329
           FV +HIF Y  LED K R     F +L   ++  RK+  + D QH
Sbjct: 119 FVIFHIFLYFYLEDQKAREQKKYFEELIAEQMAARKREEQDDQQH 163


>AF039716-2|AAB96737.1|  462|Caenorhabditis elegans Hypothetical
           protein W03G9.3 protein.
          Length = 462

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 201 FVFYHIFAY--LEDAKERLNMPEFNKLFVHEILYRKKAFEQDLQH 329
           FV +HIF Y  LED K R     F +L   ++  RK+  + D QH
Sbjct: 119 FVIFHIFLYFYLEDQKAREQKKYFEELIAEQMAARKREEQDDQQH 163


>AL021171-1|CAA15958.1|  204|Caenorhabditis elegans Hypothetical
           protein H04D03.1 protein.
          Length = 204

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 201 FVFYHIFAY--LEDAKERLNMPEFNKLFVHEILYRKKAFEQDLQH 329
           FV +HIF Y  LED K R     F +L   ++  RK+  + + QH
Sbjct: 117 FVIFHIFLYFYLEDQKAREQKKYFEELIAEQMAARKREEQDEKQH 161


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 396  QDLERDNPKLLMAYVYHLYLGLLSGGQILSKKRRVFGEKNEQPNTYVD 539
            ++ +R    +L  ++YH Y G+ +GG I  +    +G+  E P  + D
Sbjct: 4910 EEPDRKCHNMLTCFIYHFYAGVRAGGGIGDELESPYGDDLEYPRMFYD 4957


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 396  QDLERDNPKLLMAYVYHLYLGLLSGGQILSKKRRVFGEKNEQPNTYVD 539
            ++ +R    +L  ++YH Y G+ +GG I  +    +G+  E P  + D
Sbjct: 4902 EEPDRKCHNMLTCFIYHFYAGVRAGGGIGDELESPYGDDLEYPRMFYD 4949


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,087,671
Number of Sequences: 27780
Number of extensions: 361045
Number of successful extensions: 1011
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)