BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1133 (717 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein. 163 2e-42 AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 23 2.2 DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 22 6.7 AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 6.7 >AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein. Length = 247 Score = 163 bits (395), Expect = 2e-42 Identities = 92/212 (43%), Positives = 130/212 (61%), Gaps = 5/212 (2%) Frame = +3 Query: 66 KMSEQDLFTTRMRKATRKIHSVSDALVNAKFAISLRDHTVWGGGLFVFYHIFAYLEDAKE 245 K + QD F +MRKAT++IHS+SD+LVNAK A D++VW GL VFY +F YLE A Sbjct: 2 KTNNQDTFCKKMRKATKEIHSISDSLVNAKLAFGFLDNSVWADGLLVFYEVFRYLELAMI 61 Query: 246 RLNMPEFNKLFVHEILYRKKAFEQDLQHYLGDNW-RSIPKSLALENYLQHLQDLERDNPK 422 R E LF+HE L R +AFE DL+ YLG W +++ ++ YL HL+++E P Sbjct: 62 RWKDTEIG-LFLHEELRRTEAFEVDLEFYLGKEWKKNLNLRDSVTKYLIHLKEIEDTEPI 120 Query: 423 LLMAYVYHLYLGLLSGGQILSKKR----RVFGEKNEQPNTYVDKVTDLAAVDISKLKNEF 590 LL+AY+YHLY+GLLSGG IL KKR +++ K Q N + +T+ +I +LK Sbjct: 121 LLIAYIYHLYMGLLSGGIILRKKREFMQKIWPFKEYQMNG--NNITNFKNSNIFQLKQHM 178 Query: 591 REAMNQIATTMSFRGASHIHRGEQSRCFIMNH 686 R+ MN+IA T+ + + E FI+N+ Sbjct: 179 RDTMNKIAETLDEDTKNKLIE-ESKTVFILNN 209 >AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor protein. Length = 1770 Score = 23.4 bits (48), Expect = 2.2 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = +3 Query: 393 LQDLERDNPKLLMAYVYHLYLGLLSGGQILSKKRRVF-GEKNEQPNTYVDKVTDLAAVDI 569 L L NPKL + +Y +YL + ++ + VF K P + + ++ + +D Sbjct: 671 LGKLTETNPKLARSVLYKIYLNTMESHEV--RCTAVFLLMKTNPPLSMLQRMAEFTKLDT 728 Query: 570 SKLKN 584 ++ N Sbjct: 729 NRQVN 733 >DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large subunit protein. Length = 296 Score = 21.8 bits (44), Expect = 6.7 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -1 Query: 642 GLLL*KTLSSLFGSLLH 592 G+L KTL + GSLLH Sbjct: 99 GILCKKTLGTSAGSLLH 115 >AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor protein. Length = 587 Score = 21.8 bits (44), Expect = 6.7 Identities = 7/15 (46%), Positives = 10/15 (66%) Frame = -2 Query: 527 VWLFVFFTKYPPLLG 483 VW+ F +PPL+G Sbjct: 189 VWILSFVICFPPLVG 203 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 205,958 Number of Sequences: 438 Number of extensions: 4166 Number of successful extensions: 11 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 22170330 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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