Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1133
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.    163   2e-42
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.7  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score =  163 bits (395), Expect = 2e-42
 Identities = 92/212 (43%), Positives = 130/212 (61%), Gaps = 5/212 (2%)
 Frame = +3

Query: 66  KMSEQDLFTTRMRKATRKIHSVSDALVNAKFAISLRDHTVWGGGLFVFYHIFAYLEDAKE 245
           K + QD F  +MRKAT++IHS+SD+LVNAK A    D++VW  GL VFY +F YLE A  
Sbjct: 2   KTNNQDTFCKKMRKATKEIHSISDSLVNAKLAFGFLDNSVWADGLLVFYEVFRYLELAMI 61

Query: 246 RLNMPEFNKLFVHEILYRKKAFEQDLQHYLGDNW-RSIPKSLALENYLQHLQDLERDNPK 422
           R    E   LF+HE L R +AFE DL+ YLG  W +++    ++  YL HL+++E   P 
Sbjct: 62  RWKDTEIG-LFLHEELRRTEAFEVDLEFYLGKEWKKNLNLRDSVTKYLIHLKEIEDTEPI 120

Query: 423 LLMAYVYHLYLGLLSGGQILSKKR----RVFGEKNEQPNTYVDKVTDLAAVDISKLKNEF 590
           LL+AY+YHLY+GLLSGG IL KKR    +++  K  Q N   + +T+    +I +LK   
Sbjct: 121 LLIAYIYHLYMGLLSGGIILRKKREFMQKIWPFKEYQMNG--NNITNFKNSNIFQLKQHM 178

Query: 591 REAMNQIATTMSFRGASHIHRGEQSRCFIMNH 686
           R+ MN+IA T+     + +   E    FI+N+
Sbjct: 179 RDTMNKIAETLDEDTKNKLIE-ESKTVFILNN 209


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 393 LQDLERDNPKLLMAYVYHLYLGLLSGGQILSKKRRVF-GEKNEQPNTYVDKVTDLAAVDI 569
           L  L   NPKL  + +Y +YL  +   ++  +   VF   K   P + + ++ +   +D 
Sbjct: 671 LGKLTETNPKLARSVLYKIYLNTMESHEV--RCTAVFLLMKTNPPLSMLQRMAEFTKLDT 728

Query: 570 SKLKN 584
           ++  N
Sbjct: 729 NRQVN 733


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 642 GLLL*KTLSSLFGSLLH 592
           G+L  KTL +  GSLLH
Sbjct: 99  GILCKKTLGTSAGSLLH 115


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 527 VWLFVFFTKYPPLLG 483
           VW+  F   +PPL+G
Sbjct: 189 VWILSFVICFPPLVG 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,958
Number of Sequences: 438
Number of extensions: 4166
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)